Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p08
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   8.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 492 C*PWTALAVCLCTKSVFT 439
           C  W +L + LCT S+ +
Sbjct: 111 CDSWVSLDILLCTASILS 128


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   QTGTPHINFLLILTQH*TYTR 65
           + GTP INF  +   H  Y R
Sbjct: 141 EPGTPRINFTKLKRHHPRYKR 161


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 55  HILDITFT*TLFALHALIILSPTLTHTFSVQYLLFNL 165
           H+L  T T TL A  A  I +        V YLL++L
Sbjct: 131 HMLTTTITLTLLAYQATKIHAVDTYAASVVGYLLYSL 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,959
Number of Sequences: 438
Number of extensions: 4675
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)