Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p06
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   372   e-103
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    33   0.35 
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF040660-7|AAN65287.1|  366|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  372 bits (915), Expect = e-103
 Identities = 169/266 (63%), Positives = 199/266 (74%)
 Frame = -2

Query: 870 WNMPFAXCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNT 691
           W MPFA CTRE+ PW EFAES   GPTT FL +LA+K+ +VI+S ILERDE+  D++WNT
Sbjct: 123 WTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNT 182

Query: 690 AVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVL 511
           AVVIS TG VIG+ RKNHIPRVGDFNES YYME   GHPVF T+YG+I +NIC+GRHH  
Sbjct: 183 AVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQ 242

Query: 510 NWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEF 331
           NWMM+  NGAEI+FNPSAT+     SE +W +EARNAAI N  FT  INRVG E FPNEF
Sbjct: 243 NWMMYALNGAEIIFNPSATVGAL--SEPLWGIEARNAAIANHVFTVGINRVGTEVFPNEF 300

Query: 330 TSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIKDRRCYYM 151
           TS +G+PAHKD G FYGSSY   PDG R P LSR R+G+LIA +DLNL RQ KD   + M
Sbjct: 301 TSGNGQPAHKDFGHFYGSSYIAAPDGSRTPALSRVREGVLIAELDLNLCRQCKDAWGFRM 360

Query: 150 TQRLDMYVNSLSKVLELDYKPQVVHE 73
           T RLDMY   +++V   DY+P +  E
Sbjct: 361 TNRLDMYAQKITEVSNPDYRPDIRRE 386


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
 Frame = -2

Query: 804 EDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRV 625
           E+G  +  +  LA +  + IV  ++ER+   +  L+ +    S +G  +GKHRK  +P  
Sbjct: 79  ENGEESKLIESLAAQNNIHIVIGVVERE---ASTLYCSVFFYSPSG-YLGKHRKL-LPTA 133

Query: 624 GDFNESNYYMEGN-TGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPS 460
               E   + +G+ +  PVF+T  GKI   IC+  +  L  M       +I   P+
Sbjct: 134 ---LERCVWGQGDGSTMPVFSTSVGKIGSAICWENYMPLYRMTLYSKEIQIYLAPT 186


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 647 RCFPITFPVSLITTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 793
           +C P+TF ++   T +       F+++  IE+T I IA L+  +   V++
Sbjct: 75  KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124


>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +1

Query: 409 SFNVPHVLAAAFSGDRR*RIEDDLRSVLSEHHPVQDVVPSEADVHRDLAVSGRKYRMAGV 588
           SFNV  +    + G++R +   ++   + +H  +QD+ P+   + RD  +     ++AG+
Sbjct: 21  SFNVDKLTEYYYGGEKRLKARREVEKCVEDHKELQDLKPTPF-MSRDELIDNSVRKLAGM 79


>AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical
           protein F13B6.1 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 598 VVVGFVKIADSRNVVLAMFPDHVSGVTNYNR 690
           V+ GFV + DS+++V     D + G+TNY++
Sbjct: 156 VLNGFVGLPDSKDMVQFFDSDSIEGLTNYDQ 186


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 507 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 343
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387


>AF040660-7|AAN65287.1|  366|Caenorhabditis elegans Hypothetical
           protein W05G11.6c protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 507 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 343
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 47  WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 102


>AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical
           protein W05G11.6b protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 507 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 343
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 222 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 277


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 507 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 343
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 699 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYM 595
           WN  + + D   ++   +  H+ R GD+   NY++
Sbjct: 266 WNKKIAMKDVPFIVYSPQFEHVIRGGDWENENYFL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,593,881
Number of Sequences: 27780
Number of extensions: 422303
Number of successful extensions: 1324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)