Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p05
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    33   0.042
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    28   1.2  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   2.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   8.5  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 401 WFNCKTELCSLYRRITSWLRHHCLNC 324
           +FNC   L S Y R +SWL H  L C
Sbjct: 337 YFNCNDRLRSFYYRFSSWLFHQTLAC 362


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 543 LGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQ 394
           L R+  +  + +   T  + WR N EP     +  HI+  K++ ++FL++
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIFLLE 255


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 407 YSWFNCKTELCSLYRRITSWLRHHCLNCTIMLR 309
           Y WF     +CS+   IT WL H    C + ++
Sbjct: 218 YEWFFVLHHMCSIGFLITIWLHHR--RCVVYMK 248


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 90   NNNWMFLGKHIMEGDIHSCLTLSFVVV*LQKYCRNSF 200
            N++W+  GK+IM G +H       +++ L K   NSF
Sbjct: 1235 NSDWLANGKYIMFGMVHPQYHDRHLILALNKAKTNSF 1271


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 567 LKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQY 454
           ++RL  ET   ++  K   L+ + +     PNF+PP+Y
Sbjct: 221 IRRLNAETTVEKELPKPIDLVSEKLATSNIPNFQPPKY 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,927
Number of Sequences: 5004
Number of extensions: 67707
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)