Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p05
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456919-1|CAG33200.1| 227|Homo sapiens CPSF5 protein. 313 4e-85
BC001403-1|AAH01403.1| 227|Homo sapiens nudix (nucleoside dipho... 313 4e-85
AJ001810-1|CAA05026.1| 227|Homo sapiens pre-mRNA cleavage facto... 313 4e-85
BX537360-1|CAD97606.1| 227|Homo sapiens hypothetical protein pr... 312 1e-84
D29642-1|BAA06125.2| 666|Homo sapiens KIAA0053 protein. 31 3.3
BX537943-1|CAD97911.1| 886|Homo sapiens hypothetical protein pr... 31 3.3
BC129988-1|AAI29989.1| 1050|Homo sapiens SUMO1/sentrin specific ... 31 3.3
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ... 31 3.3
AF217504-1|AAG09703.1| 238|Homo sapiens sentrin/SUMO-specific p... 31 3.3
AF199458-1|AAL25651.1| 1017|Homo sapiens SUMO-1 specific proteas... 31 3.3
AC097495-2|AAY15074.1| 558|Homo sapiens unknown protein. 31 3.3
AB051494-1|BAB21798.1| 756|Homo sapiens KIAA1707 protein protein. 31 3.3
AL136599-1|CAB66534.1| 984|Homo sapiens hypothetical protein pr... 31 5.7
>CR456919-1|CAG33200.1| 227|Homo sapiens CPSF5 protein.
Length = 227
Score = 313 bits (769), Expect = 4e-85
Identities = 141/163 (86%), Positives = 152/163 (93%)
Frame = -1
Query: 738 FQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKR 559
FQRMREEF KIGMRR+VEGVL+VHEH LPHVLLLQLGT FFKLPGGELNPGEDE++GLKR
Sbjct: 64 FQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKR 123
Query: 558 LLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRA 379
L+TE LGRQDGV Q+W+I+D IGNWWRPNFEPPQYPYIP HITKPKEHK+LFLVQLQ++A
Sbjct: 124 LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKA 183
Query: 378 LFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIY 250
LFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFNFIY
Sbjct: 184 LFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIY 226
>BC001403-1|AAH01403.1| 227|Homo sapiens nudix (nucleoside
diphosphate linked moiety X)-type motif 21 protein.
Length = 227
Score = 313 bits (769), Expect = 4e-85
Identities = 141/163 (86%), Positives = 152/163 (93%)
Frame = -1
Query: 738 FQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKR 559
FQRMREEF KIGMRR+VEGVL+VHEH LPHVLLLQLGT FFKLPGGELNPGEDE++GLKR
Sbjct: 64 FQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKR 123
Query: 558 LLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRA 379
L+TE LGRQDGV Q+W+I+D IGNWWRPNFEPPQYPYIP HITKPKEHK+LFLVQLQ++A
Sbjct: 124 LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKA 183
Query: 378 LFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIY 250
LFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFNFIY
Sbjct: 184 LFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIY 226
>AJ001810-1|CAA05026.1| 227|Homo sapiens pre-mRNA cleavage factor I
25 kDa subunit protein.
Length = 227
Score = 313 bits (769), Expect = 4e-85
Identities = 141/163 (86%), Positives = 152/163 (93%)
Frame = -1
Query: 738 FQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKR 559
FQRMREEF KIGMRR+VEGVL+VHEH LPHVLLLQLGT FFKLPGGELNPGEDE++GLKR
Sbjct: 64 FQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKR 123
Query: 558 LLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRA 379
L+TE LGRQDGV Q+W+I+D IGNWWRPNFEPPQYPYIP HITKPKEHK+LFLVQLQ++A
Sbjct: 124 LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKA 183
Query: 378 LFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIY 250
LFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFNFIY
Sbjct: 184 LFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIY 226
>BX537360-1|CAD97606.1| 227|Homo sapiens hypothetical protein
protein.
Length = 227
Score = 312 bits (765), Expect = 1e-84
Identities = 140/163 (85%), Positives = 152/163 (93%)
Frame = -1
Query: 738 FQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKR 559
FQRMREEF KIGMRR+VEGVL+VHEH LPHVLLLQLGT FFKLPGGEL+PGEDE++GLKR
Sbjct: 64 FQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELDPGEDEVEGLKR 123
Query: 558 LLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRA 379
L+TE LGRQDGV Q+W+I+D IGNWWRPNFEPPQYPYIP HITKPKEHK+LFLVQLQ++A
Sbjct: 124 LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKA 183
Query: 378 LFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIY 250
LFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFNFIY
Sbjct: 184 LFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQPLSRFNFIY 226
>D29642-1|BAA06125.2| 666|Homo sapiens KIAA0053 protein.
Length = 666
Score = 31.5 bits (68), Expect = 3.3
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = -1
Query: 603 GELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFE 466
G+ N GE+EID L+R++ E R++ Q+ + E+ I N + N++
Sbjct: 562 GKKNSGEEEIDSLQRMVQEL--RKEIETQKQMYEEQIKNLEKENYD 605
>BX537943-1|CAD97911.1| 886|Homo sapiens hypothetical protein
protein.
Length = 886
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -3
Query: 571 WFEEASHRDFRQARRCQTGMAH*RHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST 392
W EEA + DF Q Q+ +++ K + + RTT+ SA ++ + +P
Sbjct: 706 WLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKM 765
Query: 391 ARQSSVRCTEELQA 350
++ + + L+A
Sbjct: 766 CKRPCILILDSLKA 779
>BC129988-1|AAI29989.1| 1050|Homo sapiens SUMO1/sentrin specific
peptidase 7 protein.
Length = 1050
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -3
Query: 571 WFEEASHRDFRQARRCQTGMAH*RHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST 392
W EEA + DF Q Q+ +++ K + + RTT+ SA ++ + +P
Sbjct: 870 WLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKM 929
Query: 391 ARQSSVRCTEELQA 350
++ + + L+A
Sbjct: 930 CKRPCILILDSLKA 943
>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
protein.
Length = 1362
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 501 DTIGNWWRPNFEPPQYPYIPPHITKPKEH 415
D IG++ +P PQ P +PPH+ +P EH
Sbjct: 818 DPIGHFTQPILHLPQ-PELPPHLPQPPEH 845
>AF217504-1|AAG09703.1| 238|Homo sapiens sentrin/SUMO-specific
protease protein.
Length = 238
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -3
Query: 571 WFEEASHRDFRQARRCQTGMAH*RHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST 392
W EEA + DF Q Q+ +++ K + + RTT+ SA ++ + +P
Sbjct: 58 WLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKM 117
Query: 391 ARQSSVRCTEELQA 350
++ + + L+A
Sbjct: 118 CKRPCILILDSLKA 131
>AF199458-1|AAL25651.1| 1017|Homo sapiens SUMO-1 specific protease 2
protein.
Length = 1017
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -3
Query: 571 WFEEASHRDFRQARRCQTGMAH*RHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST 392
W EEA + DF Q Q+ +++ K + + RTT+ SA ++ + +P
Sbjct: 837 WLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKM 896
Query: 391 ARQSSVRCTEELQA 350
++ + + L+A
Sbjct: 897 CKRPCILILDSLKA 910
>AC097495-2|AAY15074.1| 558|Homo sapiens unknown protein.
Length = 558
Score = 31.5 bits (68), Expect = 3.3
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = -1
Query: 603 GELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFE 466
G+ N GE+EID L+R++ E R++ Q+ + E+ I N + N++
Sbjct: 454 GKKNSGEEEIDSLQRMVQEL--RKEIETQKQMYEEQIKNLEKENYD 497
>AB051494-1|BAB21798.1| 756|Homo sapiens KIAA1707 protein protein.
Length = 756
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -3
Query: 571 WFEEASHRDFRQARRCQTGMAH*RHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST 392
W EEA + DF Q Q+ +++ K + + RTT+ SA ++ + +P
Sbjct: 576 WLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKM 635
Query: 391 ARQSSVRCTEELQA 350
++ + + L+A
Sbjct: 636 CKRPCILILDSLKA 649
>AL136599-1|CAB66534.1| 984|Homo sapiens hypothetical protein
protein.
Length = 984
Score = 30.7 bits (66), Expect = 5.7
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = -3
Query: 571 WFEEASHRDFRQARRCQTGMAH*RHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST 392
W EEA + DF Q Q+ + + K + + RTT+ SA ++ + +P
Sbjct: 804 WLEEAVYEDFPQTVSQQSQAQQSQSDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKM 863
Query: 391 ARQSSVRCTEELQA 350
++ + + L+A
Sbjct: 864 CKRPCILILDSLKA 877
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,829,020
Number of Sequences: 237096
Number of extensions: 2374830
Number of successful extensions: 4785
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4785
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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