Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p03
(860 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39317-1|AAA91460.1| 147|Homo sapiens UbcH5B protein. 38 0.036
L40146-1|AAC41750.1| 147|Homo sapiens ubiquitin conjugating enz... 38 0.036
BC033349-1|AAH33349.1| 147|Homo sapiens ubiquitin-conjugating e... 38 0.036
AY651263-1|AAX35690.1| 147|Homo sapiens ubiquitin-conjugating e... 38 0.036
AF317220-1|AAK93958.1| 118|Homo sapiens ubiquitin-conjugating e... 38 0.036
AK095822-1|BAC04632.1| 148|Homo sapiens protein ( Homo sapiens ... 38 0.062
BC004104-1|AAH04104.1| 147|Homo sapiens ubiquitin-conjugating e... 37 0.082
AK001446-1|BAA91697.1| 147|Homo sapiens protein ( Homo sapiens ... 37 0.082
AF125045-1|AAD31181.1| 109|Homo sapiens ubiquitin-conjugating e... 37 0.082
AF125044-1|AAD31180.1| 147|Homo sapiens ubiquitin-conjugating e... 37 0.082
U39318-1|AAA91461.1| 147|Homo sapiens UbcH5C protein. 36 0.19
BC066917-1|AAH66917.1| 147|Homo sapiens ubiquitin-conjugating e... 36 0.19
BC037894-1|AAH37894.1| 147|Homo sapiens ubiquitin-conjugating e... 36 0.19
BC003395-1|AAH03395.1| 147|Homo sapiens ubiquitin-conjugating e... 36 0.19
AF213884-3|AAF35234.1| 147|Homo sapiens ubiquitin-conjugating e... 36 0.19
CR456916-1|CAG33197.1| 147|Homo sapiens UBE2D3 protein. 34 0.76
X78140-1|CAA55019.1| 147|Homo sapiens ubiquitin conjugating enz... 33 1.0
BT007041-1|AAP35690.1| 147|Homo sapiens ubiquitin-conjugating e... 33 1.0
BC015997-1|AAH15997.1| 147|Homo sapiens ubiquitin-conjugating e... 33 1.0
BC005980-1|AAH05980.1| 147|Homo sapiens ubiquitin-conjugating e... 33 1.0
AJ293565-1|CAC82097.1| 147|Homo sapiens ubiquitin-conjugating e... 33 1.0
AJ272367-1|CAC82177.1| 147|Homo sapiens ubiquitin-conjugating e... 33 1.0
AF257220-1|AAM81086.1| 147|Homo sapiens ubiquitin-conjugating e... 33 1.0
>U39317-1|AAA91460.1| 147|Homo sapiens UbcH5B protein.
Length = 147
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDREK N +AREWT+KYAM
Sbjct: 129 TDREKYNRIAREWTQKYAM 147
>L40146-1|AAC41750.1| 147|Homo sapiens ubiquitin conjugating enzyme
protein.
Length = 147
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDREK N +AREWT+KYAM
Sbjct: 129 TDREKYNRIAREWTQKYAM 147
>BC033349-1|AAH33349.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 2 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDREK N +AREWT+KYAM
Sbjct: 129 TDREKYNRIAREWTQKYAM 147
>AY651263-1|AAX35690.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2 D2 transcript variant 1 protein.
Length = 147
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDREK N +AREWT+KYAM
Sbjct: 129 TDREKYNRIAREWTQKYAM 147
>AF317220-1|AAK93958.1| 118|Homo sapiens ubiquitin-conjugating
enzyme protein.
Length = 118
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDREK N +AREWT+KYAM
Sbjct: 100 TDREKYNRIAREWTQKYAM 118
>AK095822-1|BAC04632.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ38503 fis, clone HCHON2000056, highly similar to
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3 (EC 6.3.2.19).
).
Length = 148
Score = 37.5 bits (83), Expect = 0.062
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N LAREWT KYAM
Sbjct: 129 TDRDKYNRLAREWTEKYAM 147
>BC004104-1|AAH04104.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 4 (putative) protein.
Length = 147
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 855 DREKXNELAREWTRKYAM 802
DREK N LAREWT+KYAM
Sbjct: 130 DREKYNRLAREWTQKYAM 147
>AK001446-1|BAA91697.1| 147|Homo sapiens protein ( Homo sapiens
cDNA FLJ10584 fis, clone NT2RP2003737, highly similar to
UBIQUITIN-CONJUGATING ENZYME E2-17 KD 2 (EC 6.3.2.19).
).
Length = 147
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 855 DREKXNELAREWTRKYAM 802
DREK N LAREWT+KYAM
Sbjct: 130 DREKYNRLAREWTQKYAM 147
>AF125045-1|AAD31181.1| 109|Homo sapiens ubiquitin-conjugating
enzyme 1 isoform protein.
Length = 109
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 855 DREKXNELAREWTRKYAM 802
DREK N LAREWT+KYAM
Sbjct: 92 DREKYNRLAREWTQKYAM 109
>AF125044-1|AAD31180.1| 147|Homo sapiens ubiquitin-conjugating
enzyme HBUCE1 protein.
Length = 147
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 855 DREKXNELAREWTRKYAM 802
DREK N LAREWT+KYAM
Sbjct: 130 DREKYNRLAREWTQKYAM 147
>U39318-1|AAA91461.1| 147|Homo sapiens UbcH5C protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.19
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N ++REWT+KYAM
Sbjct: 129 TDRDKYNRISREWTQKYAM 147
>BC066917-1|AAH66917.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 3 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.19
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N ++REWT+KYAM
Sbjct: 129 TDRDKYNRISREWTQKYAM 147
>BC037894-1|AAH37894.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 3 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.19
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N ++REWT+KYAM
Sbjct: 129 TDRDKYNRISREWTQKYAM 147
>BC003395-1|AAH03395.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 3 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.19
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N ++REWT+KYAM
Sbjct: 129 TDRDKYNRISREWTQKYAM 147
>AF213884-3|AAF35234.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 3 protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.19
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N ++REWT+KYAM
Sbjct: 129 TDRDKYNRISREWTQKYAM 147
>CR456916-1|CAG33197.1| 147|Homo sapiens UBE2D3 protein.
Length = 147
Score = 33.9 bits (74), Expect = 0.76
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
TDR+K N ++REWT+KYA+
Sbjct: 129 TDRDKYNRVSREWTQKYAI 147
>X78140-1|CAA55019.1| 147|Homo sapiens ubiquitin conjugating enzyme
protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
>BT007041-1|AAP35690.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 1 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
>BC015997-1|AAH15997.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 1 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
>BC005980-1|AAH05980.1| 147|Homo sapiens ubiquitin-conjugating
enzyme E2D 1 (UBC4/5 homolog, yeast) protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
>AJ293565-1|CAC82097.1| 147|Homo sapiens ubiquitin-conjugating
enzyme protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
>AJ272367-1|CAC82177.1| 147|Homo sapiens ubiquitin-conjugating
enzyme protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
>AF257220-1|AAM81086.1| 147|Homo sapiens ubiquitin-conjugating
enzyme protein.
Length = 147
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 858 TDREKXNELAREWTRKYAM 802
+D+EK N AREWT+KYAM
Sbjct: 129 SDKEKYNRHAREWTQKYAM 147
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,698,993
Number of Sequences: 237096
Number of extensions: 2109235
Number of successful extensions: 3466
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3466
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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