Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p02
(814 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC065014-1|AAH65014.1| 704|Homo sapiens membrane-associated rin... 34 0.70
AK222880-1|BAD96600.1| 704|Homo sapiens axotrophin variant prot... 34 0.70
AK022973-1|BAB14340.1| 704|Homo sapiens protein ( Homo sapiens ... 34 0.70
AC009961-1|AAY14941.1| 704|Homo sapiens unknown protein. 34 0.70
D63484-1|BAA09771.1| 944|Homo sapiens KIAA0150 protein. 33 1.6
DQ501251-1|ABF68612.1| 360|Homo sapiens cyclon protein. 33 1.6
BC038670-1|AAH38670.1| 948|Homo sapiens zinc finger CCCH-type c... 33 1.6
BC034435-1|AAH34435.1| 335|Homo sapiens ZC3H3 protein protein. 33 1.6
BC001974-1|AAH01974.1| 498|Homo sapiens Unknown (protein for IM... 33 1.6
BC001378-1|AAH01378.1| 360|Homo sapiens coiled-coil domain cont... 33 1.6
AK025974-1|BAB15304.1| 360|Homo sapiens protein ( Homo sapiens ... 33 1.6
U97698-1|AAC51370.1| 421|Homo sapiens secretory mucin MUC6 prot... 31 3.7
AM183303-1|CAJ66088.1| 418|Homo sapiens autogenous vein graft r... 31 3.7
AK092533-1|BAC03911.1| 325|Homo sapiens protein ( Homo sapiens ... 31 3.7
DQ016500-1|AAY84741.1| 237|Homo sapiens apoptosis-inducing fact... 31 6.5
DQ016498-1|AAY84739.1| 324|Homo sapiens apoptosis-inducing fact... 31 6.5
CR457379-1|CAG33660.1| 613|Homo sapiens PDCD8 protein. 31 6.5
BC139738-1|AAI39739.1| 613|Homo sapiens apoptosis-inducing fact... 31 6.5
BC111065-1|AAI11066.1| 609|Homo sapiens apoptosis-inducing fact... 31 6.5
AY795557-1|AAV54054.1| 225|Homo sapiens apoptosis-inducing fact... 31 6.5
AY795556-1|AAV54053.1| 226|Homo sapiens striatal apoptosis-indu... 31 6.5
AL139234-3|CAI42780.1| 609|Homo sapiens apoptosis-inducing fact... 31 6.5
AL139234-2|CAI42778.1| 613|Homo sapiens apoptosis-inducing fact... 31 6.5
AL049703-1|CAB41267.1| 609|Homo sapiens hypothetical protein pr... 31 6.5
AF131759-1|AAD20036.1| 443|Homo sapiens Unknown protein. 31 6.5
AF100928-1|AAD16436.1| 613|Homo sapiens apoptosis-inducing fact... 31 6.5
AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens ... 30 8.7
>BC065014-1|AAH65014.1| 704|Homo sapiens membrane-associated ring
finger (C3HC4) 7 protein.
Length = 704
Score = 33.9 bits (74), Expect = 0.70
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 676 TSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANATK 500
+S S+ SR S + + L + +SP +L A RS++PSAS +P R + A++
Sbjct: 288 SSMSSTFFSRRSSQDSLNTRSLNSENSYVSPRILTASQSRSNVPSASEVPDNRASEASQ 346
>AK222880-1|BAD96600.1| 704|Homo sapiens axotrophin variant
protein.
Length = 704
Score = 33.9 bits (74), Expect = 0.70
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 676 TSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANATK 500
+S S+ SR S + + L + +SP +L A RS++PSAS +P R + A++
Sbjct: 288 SSMSSTFFSRRSSQDSLNTRSLNSENSYVSPRILTASQSRSNVPSASEVPDNRASEASQ 346
>AK022973-1|BAB14340.1| 704|Homo sapiens protein ( Homo sapiens
cDNA FLJ12911 fis, clone NT2RP2004425, highly similar to
Mus musculus axotrophin mRNA. ).
Length = 704
Score = 33.9 bits (74), Expect = 0.70
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 676 TSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANATK 500
+S S+ SR S + + L + +SP +L A RS++PSAS +P R + A++
Sbjct: 288 SSMSSTFFSRRSSQDSLNTRSLNSENSYVSPRILTASQSRSNVPSASEVPDNRASEASQ 346
>AC009961-1|AAY14941.1| 704|Homo sapiens unknown protein.
Length = 704
Score = 33.9 bits (74), Expect = 0.70
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 676 TSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANATK 500
+S S+ SR S + + L + +SP +L A RS++PSAS +P R + A++
Sbjct: 288 SSMSSTFFSRRSSQDSLNTRSLNSENSYVSPRILTASQSRSNVPSASEVPDNRASEASQ 346
>D63484-1|BAA09771.1| 944|Homo sapiens KIAA0150 protein.
Length = 944
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = -1
Query: 763 CGSGCQTEVTAFQTKHH*LRNVRAGIPPP---TSDSTASLSRVSRIPTAFSTKLTTNTRS 593
C G Q ++ K H R + P P T+ S S S R P+A S + T T S
Sbjct: 783 CPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSA-SQRPTRQTPS 841
Query: 592 ISPSLLFAYAIRSHLPSASSIPKTRNANATKS 497
+ A A H P S+ P + A+++ S
Sbjct: 842 SAALTAAAVAAPPHCPGGSASPSSSKASSSSS 873
>DQ501251-1|ABF68612.1| 360|Homo sapiens cyclon protein.
Length = 360
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = -2
Query: 450 IEVKSTATQSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWKN 271
++ K T +RKM ER + K+ + AR E ++ Q K+ + K L N +
Sbjct: 258 LQDKPLRTSWQRKMK--ERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENERK 315
Query: 270 VQPKPLNKDPLAFSYLKQKQLAEGDVKMRNALLKK 166
+ + ++P K+KQL + + ALL+K
Sbjct: 316 AEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQK 350
>BC038670-1|AAH38670.1| 948|Homo sapiens zinc finger CCCH-type
containing 3 protein.
Length = 948
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = -1
Query: 763 CGSGCQTEVTAFQTKHH*LRNVRAGIPPP---TSDSTASLSRVSRIPTAFSTKLTTNTRS 593
C G Q ++ K H R + P P T+ S S S R P+A S + T T S
Sbjct: 787 CPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSA-SQRPTRQTPS 845
Query: 592 ISPSLLFAYAIRSHLPSASSIPKTRNANATKS 497
+ A A H P S+ P + A+++ S
Sbjct: 846 SAALTAAAVAAPPHCPGGSASPSSSKASSSSS 877
>BC034435-1|AAH34435.1| 335|Homo sapiens ZC3H3 protein protein.
Length = 335
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = -1
Query: 763 CGSGCQTEVTAFQTKHH*LRNVRAGIPPP---TSDSTASLSRVSRIPTAFSTKLTTNTRS 593
C G Q ++ K H R + P P T+ S S S R P+A S + T T S
Sbjct: 174 CPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSA-SQRPTRQTPS 232
Query: 592 ISPSLLFAYAIRSHLPSASSIPKTRNANATKS 497
+ A A H P S+ P + A+++ S
Sbjct: 233 SAALTAAAVAAPPHCPGGSASPSSSKASSSSS 264
>BC001974-1|AAH01974.1| 498|Homo sapiens Unknown (protein for
IMAGE:3457069) protein.
Length = 498
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = -1
Query: 763 CGSGCQTEVTAFQTKHH*LRNVRAGIPPP---TSDSTASLSRVSRIPTAFSTKLTTNTRS 593
C G Q ++ K H R + P P T+ S S S R P+A S + T T S
Sbjct: 337 CPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSA-SQRPTRQTPS 395
Query: 592 ISPSLLFAYAIRSHLPSASSIPKTRNANATKS 497
+ A A H P S+ P + A+++ S
Sbjct: 396 SAALTAAAVAAPPHCPGGSASPSSSKASSSSS 427
>BC001378-1|AAH01378.1| 360|Homo sapiens coiled-coil domain
containing 86 protein.
Length = 360
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = -2
Query: 450 IEVKSTATQSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWKN 271
++ K T +RKM ER + K+ + AR E ++ Q K+ + K L N +
Sbjct: 258 LQDKPLRTSWQRKMK--ERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENERK 315
Query: 270 VQPKPLNKDPLAFSYLKQKQLAEGDVKMRNALLKK 166
+ + ++P K+KQL + + ALL+K
Sbjct: 316 AEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQK 350
>AK025974-1|BAB15304.1| 360|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22321 fis, clone HRC05390. ).
Length = 360
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = -2
Query: 450 IEVKSTATQSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWKN 271
++ K T +RKM ER + K+ + AR E ++ Q K+ + K L N +
Sbjct: 258 LQDKPLRTSWQRKMK--ERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENERK 315
Query: 270 VQPKPLNKDPLAFSYLKQKQLAEGDVKMRNALLKK 166
+ + ++P K+KQL + + ALL+K
Sbjct: 316 AEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQK 350
>U97698-1|AAC51370.1| 421|Homo sapiens secretory mucin MUC6
protein.
Length = 421
Score = 31.5 bits (68), Expect = 3.7
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 682 PPTSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANAT 503
PP+S T L +S T ST ++ S SPS + S++PS+ S P+T + +
Sbjct: 84 PPSSPITTQLPHLSSATTPVSTTNQLSS-SFSPSPSAPSTVSSYVPSSHSSPQTSSPSVG 142
Query: 502 KS 497
S
Sbjct: 143 TS 144
>AM183303-1|CAJ66088.1| 418|Homo sapiens autogenous vein graft
remodeling associated protein 2 protein.
Length = 418
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -1
Query: 622 STKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANATKSVVRSS 482
STK TTN R SPS+++ +++H SS P ++N++ V R S
Sbjct: 223 STK-TTNPRFSSPSIIWKADLQAHAQKVSSQPLSQNSSLHSCVWRVS 268
>AK092533-1|BAC03911.1| 325|Homo sapiens protein ( Homo sapiens
cDNA FLJ35214 fis, clone PROST1000512, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 325
Score = 31.5 bits (68), Expect = 3.7
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 682 PPTSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANAT 503
PP+S T L +S T ST ++ S SPS + S++PS+ S P+T + +
Sbjct: 71 PPSSPITTQLPHLSSATTPVSTTNQLSS-SFSPSPSAPSTVSSYVPSSHSSPQTSSPSVG 129
Query: 502 KS 497
S
Sbjct: 130 TS 131
>DQ016500-1|AAY84741.1| 237|Homo sapiens apoptosis-inducing factor
short isoform 3 protein.
Length = 237
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 84 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 124
>DQ016498-1|AAY84739.1| 324|Homo sapiens apoptosis-inducing factor
short isoform 2 protein.
Length = 324
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 171 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 211
>CR457379-1|CAG33660.1| 613|Homo sapiens PDCD8 protein.
Length = 613
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 171 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 211
>BC139738-1|AAI39739.1| 613|Homo sapiens apoptosis-inducing factor,
mitochondrion-associated, 1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 171 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 211
>BC111065-1|AAI11066.1| 609|Homo sapiens apoptosis-inducing factor,
mitochondrion-associated, 1 protein.
Length = 609
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 167 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 207
>AY795557-1|AAV54054.1| 225|Homo sapiens apoptosis-inducing factor
protein.
Length = 225
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 60 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 100
>AY795556-1|AAV54053.1| 226|Homo sapiens striatal
apoptosis-inducing factor protein.
Length = 226
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 61 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 101
>AL139234-3|CAI42780.1| 609|Homo sapiens apoptosis-inducing factor,
mitochondrion-associated, 1 protein.
Length = 609
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 167 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 207
>AL139234-2|CAI42778.1| 613|Homo sapiens apoptosis-inducing factor,
mitochondrion-associated, 1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 171 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 211
>AL049703-1|CAB41267.1| 609|Homo sapiens hypothetical protein
protein.
Length = 609
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 167 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 207
>AF131759-1|AAD20036.1| 443|Homo sapiens Unknown protein.
Length = 443
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 1 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 41
>AF100928-1|AAD16436.1| 613|Homo sapiens apoptosis-inducing factor
AIF protein.
Length = 613
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 189 MRNALLKKLFYKRNPFSPRNLIVRTLLGKDKSSYGEPPAIY 67
MR L K+L++ +P + L + GK++S Y +PP+ Y
Sbjct: 171 MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 211
>AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ39453 fis, clone PROST2010046, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 577
Score = 30.3 bits (65), Expect = 8.7
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1
Query: 682 PPTSDSTASLSRVSRIPTAFSTKLTTNTRSISPSLLFAYAIRSHLPSASSIPKTRNANAT 503
PP+S T L +S T ST + S SPS + S++PS+ S P+T + +
Sbjct: 240 PPSSPITTQLPHLSSATTPVSTTNQLSF-SFSPSPSAPSTVSSYVPSSHSSPQTSSPSVG 298
Query: 502 KS 497
S
Sbjct: 299 TS 300
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,000,154
Number of Sequences: 237096
Number of extensions: 2168437
Number of successful extensions: 13181
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13176
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -