Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p02
(814 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 26 0.36
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 26 0.36
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 25 0.83
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 24 1.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.9
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 5.9
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 5.9
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 5.9
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 22 5.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 7.8
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 26.2 bits (55), Expect = 0.36
Identities = 9/49 (18%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 469 HVRYVMIERPTSWHWHSWSWVLR--MRRVGGIVWHMRIRVRVIWILCWW 609
++ + +++ P W + + + +G I W + + V+WI+C++
Sbjct: 174 NLSHALLKDPVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCYF 222
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 26.2 bits (55), Expect = 0.36
Identities = 9/49 (18%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 469 HVRYVMIERPTSWHWHSWSWVLR--MRRVGGIVWHMRIRVRVIWILCWW 609
++ + +++ P W + + + +G I W + + V+WI+C++
Sbjct: 227 NLSHALLKDPVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCYF 275
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.83
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 547 VGGIVWHMRIRVRVIWILCWW 609
VG I W + + ++WILC++
Sbjct: 169 VGNIRWELAGTLLLVWILCYF 189
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 24.2 bits (50), Expect = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 522 VLGIEDAEGRWDRMA--YANKSEGDMDLVLVVSFVEKAVGILDTRDKDAVE 668
V GI + GR +A Y S+ D D VLV+S ++ + + DK+ V+
Sbjct: 544 VKGIPCSWGRAINVANRYVYASQPDKDRVLVISEIQMVIVDVIPTDKNPVQ 594
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 452 RSKLKAQRRRAKGKCHSSRE*RPKCKWNKRAE 357
R + K + A +CH + E P+ +W K E
Sbjct: 409 RFQAKRLKEEANIRCHVAGEPLPRVQWLKNDE 440
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/51 (21%), Positives = 20/51 (39%)
Frame = -2
Query: 426 QSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWK 274
+ +R+ K K+ E+ R Y R+ + K E+ + WK
Sbjct: 14 EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/51 (21%), Positives = 20/51 (39%)
Frame = -2
Query: 426 QSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWK 274
+ +R+ K K+ E+ R Y R+ + K E+ + WK
Sbjct: 14 EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/51 (21%), Positives = 20/51 (39%)
Frame = -2
Query: 426 QSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWK 274
+ +R+ K K+ E+ R Y R+ + K E+ + WK
Sbjct: 14 EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/51 (21%), Positives = 20/51 (39%)
Frame = -2
Query: 426 QSERKMSFFERMKTKMQMEQARRDEYQRNCSTQTKQNVTEDQTKPGLFNWK 274
+ +R+ K K+ E+ R Y R+ + K E+ + WK
Sbjct: 14 EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 22.2 bits (45), Expect = 5.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = -3
Query: 419 KGKCHSSRE*RPKCKWNK----RAETNIKGTV 336
K K +E P+CKW++ R +I GTV
Sbjct: 142 KEKAKFPQEFFPECKWSRKGFLRTRWSISGTV 173
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 552 WDRMAYANKSEGDMDL 599
W+R+ YA S GD+ +
Sbjct: 1197 WERLRYAIPSAGDISI 1212
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,341
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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