Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12o19
         (713 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104801-1|AAI04802.1|  287|Homo sapiens CCNY protein protein.         30   9.5  
BC104773-1|AAI04774.1|  287|Homo sapiens CCNY protein protein.         30   9.5  
BC094815-1|AAH94815.1|  341|Homo sapiens cyclin Y protein.             30   9.5  
BC069224-1|AAH69224.1|  343|Homo sapiens CCNY protein protein.         30   9.5  
AY504868-1|AAS79427.1|  341|Homo sapiens cyclin Y protein.             30   9.5  
AL603824-2|CAH71568.1|  341|Homo sapiens cyclin Y protein.             30   9.5  
AL603824-1|CAH71567.1|  287|Homo sapiens cyclin Y protein.             30   9.5  
AL592445-2|CAH70073.1|  341|Homo sapiens cyclin Y protein.             30   9.5  
AL592445-1|CAH70072.1|  287|Homo sapiens cyclin Y protein.             30   9.5  
AL121749-4|CAH73709.1|  341|Homo sapiens cyclin Y protein.             30   9.5  
AL121749-1|CAH73707.1|  287|Homo sapiens cyclin Y protein.             30   9.5  
AL117336-7|CAH72501.1|  341|Homo sapiens cyclin Y protein.             30   9.5  
AK057280-1|BAB71409.1|  287|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AF429969-1|AAP97301.1|  287|Homo sapiens cyclin-box carrying pro...    30   9.5  
AF413522-1|AAL07802.1|  341|Homo sapiens cyclin-box carrying pro...    30   9.5  

>BC104801-1|AAI04802.1|  287|Homo sapiens CCNY protein protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>BC104773-1|AAI04774.1|  287|Homo sapiens CCNY protein protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>BC094815-1|AAH94815.1|  341|Homo sapiens cyclin Y protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


>BC069224-1|AAH69224.1|  343|Homo sapiens CCNY protein protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 72  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 127

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 128 AIYYHIK 134


>AY504868-1|AAS79427.1|  341|Homo sapiens cyclin Y protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


>AL603824-2|CAH71568.1|  341|Homo sapiens cyclin Y protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


>AL603824-1|CAH71567.1|  287|Homo sapiens cyclin Y protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>AL592445-2|CAH70073.1|  341|Homo sapiens cyclin Y protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


>AL592445-1|CAH70072.1|  287|Homo sapiens cyclin Y protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>AL121749-4|CAH73709.1|  341|Homo sapiens cyclin Y protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


>AL121749-1|CAH73707.1|  287|Homo sapiens cyclin Y protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>AL117336-7|CAH72501.1|  341|Homo sapiens cyclin Y protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


>AK057280-1|BAB71409.1|  287|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32718 fis, clone TESTI2000830. ).
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>AF429969-1|AAP97301.1|  287|Homo sapiens cyclin-box carrying
           protein isoform protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 16  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 71

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 72  AIYYHIK 78


>AF413522-1|AAL07802.1|  341|Homo sapiens cyclin-box carrying
           protein protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 345 LTRTGSWTRELSQERLANQYPSAEAA*QPKGSC---FATDSTIA*RPRPN-KFQIRCKRL 178
           L+++ +  RE  +    N +P  + A +   SC   F  DST++   +PN K+ I+C  L
Sbjct: 70  LSKSQTDVREKRKSLFINHHPPGQIA-RKYSSCSTIFLDDSTVS---QPNLKYTIKCVAL 125

Query: 177 TIFKHIQ 157
            I+ HI+
Sbjct: 126 AIYYHIK 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,620,541
Number of Sequences: 237096
Number of extensions: 1401834
Number of successful extensions: 2114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2114
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)