Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12o18
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           25   0.92 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.9  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 620 NLAGMNETTRNRIIKEGGLSKIEHYLYED 534
           N+ G+ +    R+ + GG+ +I   +YE+
Sbjct: 26  NIQGITKPAIRRLARRGGVKRISGLIYEE 54


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 499 FVTYFSLKKLSNHMKEKMTKP 437
           F+T F L  L+N  K+K  KP
Sbjct: 383 FITMFDLDFLTNACKKKDDKP 403


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 467 KSYEGKNDKTKFLFLLCQEEDEDTVTAAAGALCILT 360
           +S E  N + K   +  Q EDE+   A AGA+ + T
Sbjct: 183 ESNENYNWEHKETHIDWQPEDEECTEATAGAVVLET 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,043
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)