Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12o15
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.051
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   7.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 373 LVSWLPYFKNTFVKPFTDSPD 311
           +V WLP+F    V+PF  +PD
Sbjct: 382 IVCWLPFFVLALVRPFLKNPD 402


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 337 VKPFTDSPDYSFTTDE 290
           +K  +D+ DYS TTDE
Sbjct: 224 IKHESDNSDYSHTTDE 239


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 814 KTNNTFHELKNSRN 773
           ++N TFHELK  R+
Sbjct: 37  RSNMTFHELKKLRD 50


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 316 PDYSFTTDEYLAVVPDLPILMLH 248
           P+     DE+ +V P  P+L+LH
Sbjct: 868 PNLVEVLDEFPSVRPFAPLLLLH 890


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,676
Number of Sequences: 438
Number of extensions: 5067
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)