Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12o13
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    35   0.001
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    35   0.001
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = +2

Query: 200 GIGTQGSK-FRANNLSGL-TGWSASLLRLIFKSGLYFGLK*R-----PDPRL*PFLDDFG 358
           G+G   +K F+A+ ++GL  G+  S+  +I     YFG         PDP+  PFL  +G
Sbjct: 158 GLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWG 217

Query: 359 AISVLTTIA 385
              V+TT+A
Sbjct: 218 IAQVVTTVA 226


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = +2

Query: 200 GIGTQGSK-FRANNLSGL-TGWSASLLRLIFKSGLYFGLK*R-----PDPRL*PFLDDFG 358
           G+G   +K F+A+ ++GL  G+  S+  +I     YFG         PDP+  PFL  +G
Sbjct: 158 GLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWG 217

Query: 359 AISVLTTIA 385
              V+TT+A
Sbjct: 218 IAQVVTTVA 226


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -3

Query: 315 HLSPKYNPDLNMSLNKDADHPVSPDRLLARNFDPWVPIPSWTELKREKKQPVVCPKDG 142
           HLSP +N + +      A       RL+      W+  P+   ++R K   + C   G
Sbjct: 674 HLSPDHNGNYSCVARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVERNKHVALHCQAQG 731


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 732 RERNRMEYCR 703
           R+RNR +YCR
Sbjct: 157 RQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 732 RERNRMEYCR 703
           R+RNR +YCR
Sbjct: 157 RQRNRCQYCR 166


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 127  WRLLAAIFRTDDRLLLLP 180
            W++  A+ ++ DRL  LP
Sbjct: 1310 WKVRGAVLQSSDRLRQLP 1327


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 193 PRRYRYPGVKISSQ 234
           PR Y YP + IS +
Sbjct: 523 PRNYMYPNIDISPE 536


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 156  CPKDGCKQTPPPKLTDPCP 100
            C   G  Q+  P +TDP P
Sbjct: 973  CQPGGVVQSQQPIMTDPSP 991


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,017
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)