Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12o05
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 31 0.20
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.61
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 29 0.80
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 29 1.1
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 1.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 1.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 28 1.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 1.9
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 3.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.3
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 4.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 4.3
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 5.7
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 7.5
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 9.9
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.9
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.9
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 25 9.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.9
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 31.1 bits (67), Expect = 0.20
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 621 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNER-RKAEEIMHRYREHE 445
R EQE+ + LEK++ ++ E ++ +E+++ + ER R EE H+ E
Sbjct: 107 RLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQR 166
Query: 444 NVEQ 433
++Q
Sbjct: 167 RLKQ 170
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = -3
Query: 645 EAFRQWLARKEQEKREKARLEKQK--QHTIPATTPEQREASYRKWLERKRMQNERRKAEE 472
EA RQ L + E+E+R+K +EK+K + I ++ + + ++ L+++++ +R++ E
Sbjct: 124 EAERQRL-KDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEA 182
Query: 471 IMHRYRE 451
R +E
Sbjct: 183 REKRMKE 189
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 621 RKEQEKREKARLEKQKQ-HTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYREHE 445
+K+QE + R EKQKQ +Q+EA K +R++ E K I+ + E
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEK--RILEERKRRE 709
Query: 444 NVEQ 433
+++
Sbjct: 710 KLDK 713
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -3
Query: 621 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKW---LERKRMQNERRKAEEIMHRYRE 451
++EQEK+++ LE+QK+ ++RE +K +R++M E+R EE R E
Sbjct: 647 KREQEKKQQ-ELERQKRE--EKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILE 703
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 29.1 bits (62), Expect = 0.80
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 560 LQPHPNNVRHLTENGWSANE 501
++PHP+ ++H+ +NGW E
Sbjct: 214 IEPHPDVLKHMRKNGWMDRE 233
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 210 SMRGSVSQMYINPVPWQSTT*SSKKFFLHL*MEYFTLKK 94
S+R V ++ PW ST+ + +L L EY TLK+
Sbjct: 415 SLRKEVWPFLLSVYPWDSTSEERRVIYLSLQEEYCTLKR 453
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/70 (17%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = -3
Query: 648 QEAFRQWLARKEQEK--REKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAE 475
+E + +W ARK+Q + E+ R +K++Q + + + ++ +++ + +++ AE
Sbjct: 522 EEEYNKWFARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAE 581
Query: 474 EIMHRYREHE 445
+ ++ +++
Sbjct: 582 IELEQFHDYK 591
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/59 (16%), Positives = 31/59 (52%)
Frame = -3
Query: 627 LARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYRE 451
L K + E+ ++ ++ ++ +Q + +Y W ++++ + R+K EE+ ++ +
Sbjct: 23 LGLKPLDISEEKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEK 81
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 648 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPE 544
QE FR +E+EKR A K ++ +IPA T E
Sbjct: 251 QEQFRLERENREKEKRRIAAQRKLEEASIPAFTEE 285
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 624 ARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYREHE 445
A +++ EKARLE ++ A +REA + +R+ + +R+AEE R E E
Sbjct: 543 AEAKRKAEEKARLEAEENAKREAEEQAKREAEEK--AKREAEEKAKREAEEKAKREAE-E 599
Query: 444 NVEQ 433
N ++
Sbjct: 600 NAKR 603
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = -3
Query: 648 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 472
++A R+ + ++E E A+ E +++ A +REA + ++R+ +N +RKAEE
Sbjct: 647 EKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEK--VKRETEENAKRKAEE 703
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = -3
Query: 648 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEI 469
++A R+ + ++E EKA+ E +++ A +REA + +R+ + +R+AEE
Sbjct: 567 EQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEK--AKREAEEKAKREAEEK 624
Query: 468 MHRYREHE 445
R E +
Sbjct: 625 AKREAEEK 632
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = -3
Query: 648 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEI 469
++A R+ + ++E EKA+ E +++ A +REA + +R+ + +R+AEE
Sbjct: 607 EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK--AKREAEEKAKREAEEN 664
Query: 468 MHRYREHE 445
R E +
Sbjct: 665 AKREAEEK 672
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 621 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMH--RYREH 448
RK +E+R + R + Q + ++ +S ++ R+ +N+R E H RYR
Sbjct: 165 RKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHR 224
Query: 447 ENVE 436
+ +
Sbjct: 225 DKYD 228
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 615 EQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYRE 451
EQE+ +K +E++ + A EQRE + K ++R+Q ER EEI + E
Sbjct: 811 EQEEAQKRAIEERTRAAREAKEREQREMA-EKLERQRRIQQER--DEEISRKLAE 862
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 677 KSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPHPNNVRHLTENGW 513
KS + +LF+ G R + + R VW++K N ++ ++H GW
Sbjct: 470 KSMKLINNNPSRLFLHGERIHNGDLSNRTVWRSKTNN-AITVEELALQHYQSIGW 523
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 749 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGWRARS-KKNAKRRVWKNKN 573
LI + + L+D P H ++ +L+K+ + +N K+FV+ + K W
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPE 583
Query: 572 NT 567
NT
Sbjct: 584 NT 585
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 665 VTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH-PNNVRHLTENGW 513
+ ++R+ K AR + +R W + LSL PH +N++ L ++G+
Sbjct: 1105 IEKERHTKQLAERLAARLDRCKTQRQWDHVVYALSLLPHKADNIQKLIDDGY 1156
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 612 QEKREKARLEKQKQHTIPATTPEQREASYRKWLER 508
Q K EK+ K K HT ATT R +S K L R
Sbjct: 157 QPKAEKSTTSKSKSHTTTATTHTSR-SSKSKGLPR 190
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -1
Query: 701 FLRPQLQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 549
++ ++ RN V+ +A + KRR+ KN+NN + H
Sbjct: 881 YIDQHFASSKSGISNGRNNNKEVNLTKAENVGIKKRRIMKNENNIYDFEDH 931
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -3
Query: 636 RQWLARKEQEKREKARLEKQKQHTIPATTPE---QREASYR-KWLE 511
R+++ K+++K+EK R+E++ + A + Q++ + R KW E
Sbjct: 388 REYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKE 433
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 59 PKCVLNKYNLEIFFKVKYSIY 121
PK K+NL +F K KY+ Y
Sbjct: 488 PKLFFRKFNLSLFDKQKYANY 508
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 134 NFLDDHVVDCQGTGFMYICDTDPRILSSP*LSG 232
NF+D + C T ++ DTD +LS SG
Sbjct: 1138 NFVDIYFTSCSPTEVSFLSDTDICLLSKSQSSG 1170
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 645 EAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERK 505
E+F W A K + + +++KQ+Q ++R+ ++ L RK
Sbjct: 492 ESFFDWEAAKVGAPQSREQIQKQRQKAKTKLENQRRDKERQEELRRK 538
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 647 RKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 549
RKL G + RS K + R+WK + L H
Sbjct: 60 RKLHAEGSKERSFKMVQGRIWKKGYESNELTSH 92
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 335 VKQHVLLLKRNEDAQKVNVPIVTGYVPA 252
+K++V LLK N QKV V ++T V A
Sbjct: 1535 LKRYVSLLKNNAIDQKVVVRLITAVVSA 1562
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 711 RIVEKCQAHLHDKYDRYEVCLHLYKL 788
R++ K AH HD D+ ++ L Y L
Sbjct: 34 RVIIKSNAHKHDPSDKRQIWLEKYYL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,986
Number of Sequences: 5004
Number of extensions: 54073
Number of successful extensions: 227
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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