Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12o02
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.001
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 0.58
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.77
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 28 1.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.3
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.1
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 27 3.1
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 26 5.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 7.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.5
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 9.5
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 9.5
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 9.5
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 9.5
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 9.5
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 186 CSNLS-CGAYFHRTCLHMWLVTSARNRP--QTFGVASGSCPS 70
C L C +FHR C+ WL +S + P +T GVAS S PS
Sbjct: 538 CRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVASASTPS 579
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 255 DSQVCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMWL 130
D ++C +C C PD + P C Y H+ CL WL
Sbjct: 4 DDEICRVCRCEGAPD-SPLFHP-CKCTGSIRYVHQECLVEWL 43
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 243 CSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMWLVTSARNR 109
C+IC V L + +P C +C FH +CL+ W +S +R
Sbjct: 1558 CAICYSV-LSVERTLPNKRCG--TCRHKFHASCLYKWFKSSNSSR 1599
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 189 LCSNL-SCGAYFHRTCLHMWLVTSARNRP 106
+C L +C +FH+ C+ WL T + P
Sbjct: 778 ICRKLQACKHFFHQACIDQWLTTGNNSCP 806
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 255 DSQVCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMWLVTSA 118
D + C+ICLC + PL L C FH C+ +L+ ++
Sbjct: 494 DQRECTICLCEYSEE-----SPLYRELPCHHIFHPACIDPYLLKNS 534
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 183 SNLSCGAYFHRTCLHMW 133
+ + CG YFH CL W
Sbjct: 52 AKIPCGHYFHNHCLESW 68
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -1
Query: 513 NPSFKDDYRKILIDDRIWLHVEVTSEGLANNLHLIGQSEFWQNKLQDGLINWDHDRDIIE 334
N S D Y K+ + +WL + NN+HL S W KL + N H I
Sbjct: 3942 NESLADSYLKLASTEPLWLFI--------NNIHL---STPWAEKLPSKMSNHLHKNSRIV 3990
Query: 333 NISQI 319
+S+I
Sbjct: 3991 CLSEI 3995
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.1
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = -2
Query: 305 YFLNVKEVRIQTLAMKQIHKF 243
YF+N +++++++L +K HK+
Sbjct: 475 YFMNTRDIKVRSLVVKLKHKY 495
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 24 NCPKFLFHYKKLLVDMK-DKNHLQRRMFGVDSLHW 125
NC +FL+H K+L D+K D R FG L++
Sbjct: 150 NCLEFLYHTKRLSYDVKCDFFSAARISFGTTCLYF 184
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 549 LIDRNCTVKEPRNPSFKDDYRKILIDDRIWL 457
L++R CT + RNP +KDD R + RIW+
Sbjct: 99 LLER-CTREFVRNPLYKDDVRYL----RIWM 124
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 321 IFDIEVFPQCERSQNTDIGNETDSQVCSICLCV--ELPDVQGVPQPLCSNLSCGAYFHRT 148
IF++E + ++ ++ G E V S+ CV ELP ++GV L CG H +
Sbjct: 759 IFEMEN-KKATGNEQSEKGKENAKTVTSLKKCVYCELP-LRGV---LVYPPVCGHIGHES 813
Query: 147 CLHMW 133
CL W
Sbjct: 814 CLRSW 818
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1
Query: 177 LSCGAYFHRTCLHMWL 130
L C YFH C+ WL
Sbjct: 412 LPCKHYFHENCIKPWL 427
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 474 DDRIWLHVEVTSEGLANNLHLIGQSEFWQNKLQDGLINWDHDRDIIENIS 325
+D I + V S NN LIG+ + + +GL D D+ N+S
Sbjct: 187 EDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRIIDDDVPANLS 236
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 456 HVEVTSEGLANNLHLIGQSEFWQNKLQDGLINWDHDRDIIENI 328
+++++SE L HLIG+S L+ WD D +++I
Sbjct: 373 NIQISSEYLQQ--HLIGESFDGNISLEPNSTEWDDDVSALQSI 413
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 288 RSQNTDIGNETDSQVCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMWL 130
+S D+ +E S + SI + + + +P+ C L YFHR H+WL
Sbjct: 169 QSSRRDVSSEKPS-IPSISF-INIRSWRTIPKKWCV-LQVLRYFHRILGHLWL 218
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 351 DRDIIENISQIFDIEVFPQ 295
D D+I NI Q++ + VF Q
Sbjct: 213 DTDVITNIDQVYPVGVFAQ 231
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +3
Query: 447 LRRVTIFCHLLIFSYNHL 500
+RR+ FC+++I+SY++L
Sbjct: 194 VRRMLPFCNVIIYSYHYL 211
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 378 QDGLINWDHDRDIIENISQIFDIEVFPQCERSQNTD 271
+D L+ + + + I+ + IE+FP CE +NTD
Sbjct: 195 RDSLVRYVSNENYIDRL-----IELFPLCEDLENTD 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,946
Number of Sequences: 5004
Number of extensions: 58608
Number of successful extensions: 167
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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