Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12o01
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.85 
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.85 
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   4.5  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   6.0  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   7.9  

>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 518 FMIFNPFI---ILFNNTVHYFNNTPTCLLSNLM*CKSLLLTIVDSFFYVQIIILYY 676
           F IF PFI   +L++N  +YF+     L S +   K ++ TIV  F YV  +I+ Y
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVV---KYVIETIVLIFTYVMTVIIVY 130


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 518 FMIFNPFI---ILFNNTVHYFNNTPTCLLSNLM*CKSLLLTIVDSFFYVQIIILYY 676
           F IF PFI   +L++N  +YF+     L S +   K ++ TIV  F YV  +I+ Y
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVV---KYVIETIVLIFTYVMTVIIVY 130


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 527 FNPFIILFNNTVH 565
           F PF+I+FNN VH
Sbjct: 499 FTPFLIIFNNLVH 511


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 250 IYQFYNRNNDKHLIYYNLE 306
           IY   +RN D H  YYNL+
Sbjct: 245 IYLLLDRNPDNHQYYYNLQ 263


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 559 CIIKQYNKRIEYHKIRGVKNLFPQIFYLLYYDDI 458
           C+ K  NK++ YH++   ++ +    +L+Y  D+
Sbjct: 457 CLEKAGNKQVVYHELDANESFYGHDTFLIYRKDL 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,766
Number of Sequences: 5004
Number of extensions: 50629
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)