Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12n17
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.71 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 406 SSRRFIDYPAPQMQDSPRRKRST----VYPLFDRTNREHNYQSHPVKINGYTPEKYTSYF 239
           S R++ +    + +D   R+RS     +  L ++T   +N   +    N Y    Y + +
Sbjct: 288 SYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNY 347

Query: 238 SNNVK 224
           +NN K
Sbjct: 348 NNNCK 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 437 QQRSSGWQRY*QPSVYRLPRAADAGQPPTKALHSVPAV*QNESGTQLSKSPRQ 279
           QQ SSG     QPS ++ P+A   G PP  +    P       G   S++P Q
Sbjct: 14  QQPSSGAPGP-QPSPHQSPQAPQRGSPPNPSQGPPPG---GPPGAPPSQNPSQ 62


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 328 LFDRTNREHNYQSHPVKINGYTPEK-YTSY 242
           L +RTNR+ N +S   + N Y  E+ Y  Y
Sbjct: 29  LEERTNRKRNSRSREREQNSYKNEREYRKY 58


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 328 LFDRTNREHNYQSHPVKINGYTPEK-YTSY 242
           L +RTNR+ N +S   + N Y  E+ Y  Y
Sbjct: 29  LEERTNRKRNSRSREREQNSYKNEREYRKY 58


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 322 DRTNREHNYQSHPVKINGYTPEKYTSYFSN 233
           DRT RE + ++  +  N Y  + Y + +++
Sbjct: 291 DRTERERSKETKIISSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 322 DRTNREHNYQSHPVKINGYTPEKYTSYFSN 233
           DRT RE + ++  +  N Y  + Y + +++
Sbjct: 302 DRTERERSKETKIISSNNYNYKNYNNNYNS 331


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 457 ASPGIFNSRGAADGSDISSRRFIDYPAPQMQD 362
           + PG  N  G++DG D   ++    P P+ Q+
Sbjct: 156 SQPGSLNGYGSSDGCDARKKK---GPTPRQQE 184


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/57 (19%), Positives = 24/57 (42%)
 Frame = -2

Query: 400 RRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNN 230
           R++ +    + +D   R+RS    +    +  +NY ++    N Y       Y++ N
Sbjct: 57  RKYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNIN 113


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 562 FPDKPWKGQQNEPN 521
           F D+P  G+ N+PN
Sbjct: 234 FLDEPLSGETNDPN 247


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 562 FPDKPWKGQQNEPN 521
           F D+P  G+ N+PN
Sbjct: 234 FLDEPLSGETNDPN 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,566
Number of Sequences: 438
Number of extensions: 5007
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)