Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12n13
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.5  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 509 SILQQCNGSNNTFNKNEFSTM 447
           S+   CN SNN +N N +  +
Sbjct: 306 SLSNSCNYSNNYYNNNNYKKL 326


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 554 SSRNCDNSL*VSHHWTY 604
           SS+N ++S+ V H W Y
Sbjct: 27  SSKNLEHSMNVIHEWKY 43


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 338 KDKNGKIEKLYDYSCQSVGNCDVIHRIRQYTV-YYDKDYLLDFTK 207
           K K+ K+    ++   +VGNCD +  + +  V   D+ ++LD  K
Sbjct: 222 KTKSPKLRPYPNWEWHTVGNCDGLTSVFRIQVDECDRLWILDSGK 266


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 437 EYTSITELKQDNHSLLRPRTVVSRFSGEY 351
           EY  +TE K+DN   L   T+    + EY
Sbjct: 425 EYNGLTEPKKDNKRKLSDSTMNKINNHEY 453


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 557 SRNCDNSL*VSHHWTY 604
           SRN  NSL V + W Y
Sbjct: 22  SRNLTNSLKVIYEWKY 37


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 347 WTVKDKNGKIE 315
           WTV+ K GK+E
Sbjct: 141 WTVERKEGKVE 151


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 129 KSIIYWWKLLVKLGCVI 179
           K+I+Y  KL +KL C +
Sbjct: 149 KTILYMVKLTLKLSCAM 165


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 347 WTVKDKNGKIE 315
           WTV+ K GK+E
Sbjct: 157 WTVERKEGKVE 167


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 347 WTVKDKNGKIE 315
           WTV+ K GK+E
Sbjct: 214 WTVERKEGKVE 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,905
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)