Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12n12
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    38   1e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    36   4e-04
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   0.32 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.5  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 448 NEVFEPCFGGCAEVSCDNPRSHLRP-CYPYCEPGCVCEEPYIRDDRTHQCVLPQDCSP 278
           NE+F  C G C    C N     +P C   C PGCVC   Y+R ++   CV    C P
Sbjct: 40  NEIFSRCDGRCQRF-CPNVVP--KPLCIKICAPGCVCRLGYLR-NKKKVCVPRSKCLP 93


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 448 NEVFEPCFGGCAEVSCDNPRSHLRP-CYPYCEPGCVCEEPYIRDDRTHQCVLPQDC 284
           NE+F  C G C    C N     +P C   C PGCVC   Y+R ++   CV    C
Sbjct: 40  NEIFSRCDGRCQRF-CPNVVP--KPLCIKICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect(2) = 0.32
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 304 CVLPQDCSPTQMGIPIPTKRDKT 236
           CVL  D + +    P+ TKRD T
Sbjct: 608 CVLKTDTNQSCPSPPVTTKRDGT 630



 Score = 21.8 bits (44), Expect(2) = 0.32
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 196 TKREGQEIVENELPP 152
           TKR+G +  E  LPP
Sbjct: 625 TKRDGTQETEERLPP 639


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 349 SQARSTGNKDVSGCGGCHTILPHN 420
           S   S  ++ + GC G HT   HN
Sbjct: 392 SSPDSARHQRIGGCNGLHTTTAHN 415


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 253 TKRDKTLSPKYSGRSYRSHTKR 188
           +KR K+ SP+  GRS  S+T +
Sbjct: 74  SKRSKSRSPESRGRSNASNTSK 95


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 SESSLVAERTDGSGRPLCRVLHTHSQARSTGN 372
           SES   ++  +   RPL +   T S  R+ GN
Sbjct: 315 SESETSSDEEEADTRPLKKEPITQSNKRTAGN 346


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 493 NGRDEDKIVKACYWPNEVFEPC 428
           N    DKI++ C W     E C
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 493 NGRDEDKIVKACYWPNEVFEPC 428
           N    DKI++ C W     E C
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 493 NGRDEDKIVKACYWPNEVFEPC 428
           N    DKI++ C W     E C
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 329 HKGRPDPSVRSATRLLSDANGYPNTHKKRQN 237
           H  R  PSV    R  +    +P  H +RQ+
Sbjct: 61  HDDREQPSVYPLLRFENPETHHPIRHGRRQS 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,907
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)