Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12n09
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   3.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.0  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 309 IYYGYDIQHTASEIMEKHN 365
           +YY +  ++++S IME HN
Sbjct: 270 LYYPHVPEYSSSIIMELHN 288


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 309 IYYGYDIQHTASEIMEKHN 365
           +YY +  ++++S IME HN
Sbjct: 285 LYYPHVPEYSSSIIMELHN 303


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/27 (22%), Positives = 13/27 (48%)
 Frame = +1

Query: 247 PWYNFFLFTHQLSYFINNVIQYITVTI 327
           PW N F      ++ + N+I  + + +
Sbjct: 586 PWANVFAKGDMEAFLVKNIIPKLQIAL 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,961
Number of Sequences: 438
Number of extensions: 1766
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)