Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m24
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 30 0.30
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 1.6
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 1.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.1
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 2.8
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 2.8
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 3.7
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 26 5.0
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 6.5
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 6.5
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 25 8.7
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.7
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 25 8.7
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.7
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.9 bits (64), Expect = 0.30
Identities = 21/97 (21%), Positives = 38/97 (39%)
Frame = -2
Query: 539 DVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAE 360
+ F V L D+ EI + Y+ P K+ E + ++ K+ K +
Sbjct: 598 EFFRFSVGGLTDVAEIKGHRRTYIGAMPGKIVQALKKVQTENPLILIDEIDKVGKSHQGD 657
Query: 359 IRKALAEAVEDICKCAYMDVYCNDLTAIDKVIDSCPA 249
AL E ++ A++D Y + + V+ C A
Sbjct: 658 PASALLELLDSEQNSAFLDYYMDIPLDVSSVLFVCTA 694
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 515 PLKDLTEIAPNEDPYVDCDPLVF 447
PLK++T + P +DP + + LV+
Sbjct: 314 PLKNITSLLPKQDPLISTEILVY 336
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 473 YVDCDPLVFKII---KKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVEDICKCAYMD 303
Y D ++K I K R P VEAR ++KL R+ + R VE++ K + D
Sbjct: 469 YADNTQQLYKNIVFGKVRFPRGLLSVEARDLIKLLLNRNPKHRLGAHGDVEEVMKHPFFD 528
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -2
Query: 596 SEPD-EPLEPK--PALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRS 426
SE D E LE + A +++ + + + I + + ++ E + DP+V ++ ++ +
Sbjct: 651 SETDIEALERRLSKAYRMEAQEEAYAINIGGGRVISPEELEEIARRNVDPMVSELSERAA 710
Query: 425 PEEQAKVEARKMVKLKKQRDAEIR 354
E + K +A++ +LKK E R
Sbjct: 711 QERERKEQAKEAKRLKKLAKEEKR 734
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 509 KDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKV 405
K LT I + P +CDP V+KI++ ++ +
Sbjct: 6 KVLTIIKLLKAPLAECDPTVYKILESEKSRQKESI 40
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 216 FLVAYTLWFFKGWTTVYNLIDGS*IITIDIHIGTFANVF 332
FLV L G+ V+ + D + +I + H G FA+ +
Sbjct: 58 FLVPLLLTVIAGFVRVWKIADSNVVIWDEAHFGKFASYY 96
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 599 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNED 477
D E D +E + AL++QRK + + + D+++ A N D
Sbjct: 136 DDEFDARMEEQEALRLQRKRLEKVSETDAIDDISQWADNSD 176
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 230 ICHEESLSSLSSNATWDIEYTPP 162
+C+EES L + WDI P
Sbjct: 155 VCYEESKKYLQKQSNWDISVIAP 177
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 293 YNRHPYRHICKCLRRLRPGPFGF 361
+NRHP+ + C P F F
Sbjct: 85 FNRHPFTRVKSCFSSSSPSKFSF 107
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 61 NFGASTIPASAGIYCVSTCIHILLFLGAKSKQP 159
++G +P SA I +ST + I +GA ++ P
Sbjct: 85 SYGLVIVPVSACICLISTIMTIFAHIGAIARSP 117
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 90 GWYILRLHVYTHSSFP 137
GWY L + THS FP
Sbjct: 193 GWYTTHLFLSTHSLFP 208
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 440 IKKRSPEE--QAKVEARKMVKLKKQRD 366
IKKRSPEE QA R+ K KK+++
Sbjct: 37 IKKRSPEELKQAIEALREKAKEKKEKE 63
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.0 bits (52), Expect = 8.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -2
Query: 509 KDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVE 330
KD ED Y P + I K +P++ K + + K KQ+ I + + E V+
Sbjct: 6 KDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQK--HILRGVKEVVK 63
Query: 329 DICKCAY-MDVYCNDLTAIDKVIDSCPAFKE 240
+ K + + D++ +D VI P E
Sbjct: 64 AVRKGEKGLVILAGDISPMD-VISHIPVLCE 93
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 396 EDGQAEEAARRRNPKGPGRSRRRHLQM 316
E+G+ E +A+ P R RRRH ++
Sbjct: 252 ENGETEVSAKNHVPHRSSRRRRRHQRL 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,485
Number of Sequences: 5004
Number of extensions: 51647
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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