Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m24
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.4  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        21   7.1  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -2

Query: 152 FDLAPRKRRMCIHVETQYIPADAGIVDAPKL 60
           F++  R    C     +YIP + G++    L
Sbjct: 449 FNMVTRDSVWCWDTRKEYIPQNLGVIGTSNL 479


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 317 CAYMDVYCNDL 285
           C Y+DVY N L
Sbjct: 4   CLYLDVYTNSL 14


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 578 LEPKPALKVQRKGDVFT 528
           L+P+P+ ++ + GD +T
Sbjct: 31  LQPRPSFELSKNGDEWT 47


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 578 LEPKPALKVQRKGDVFT 528
           L+P+P+ ++ + GD +T
Sbjct: 33  LQPRPSFELSKNGDEWT 49


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 326 ICKCAYMDVYCNDLT 282
           +C  +YM V C+D+T
Sbjct: 11  LCIVSYMMVRCDDIT 25


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 243 FKGWTTVYNLIDGS*IITIDIHIGTFANVFDG 338
           F  WT+V  L     ++  D H+    + FDG
Sbjct: 82  FDDWTSVMELHSWMTLMWTDSHLSWKPSDFDG 113


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 322 ANVPIWMSIVMI 287
           AN+P W+S + I
Sbjct: 46  ANIPTWLSFIRI 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,990
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)