Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m23
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    28   1.5  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   2.6  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.9  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   5.9  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   7.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.9  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 535 SHKATQDK*PPIQLAPHPKP 594
           SHKAT D  PP +  P P P
Sbjct: 313 SHKATSDAVPPAEAKPEPVP 332


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 506 N*SLRVHQPLRTRLHKISDLR-YNSPPIRSLHDCEVLSHL 622
           N   R  +P++    +IS LR +N PPI+  H+  +L  +
Sbjct: 27  NPMFRSLRPIQKSFSEISILRVFNKPPIKKFHNSNILKDI 66


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 502 W*LIPSGASTTSHKATQDK*PPIQLAPHPK 591
           W  +PSG +T S +A QDK    +L  H K
Sbjct: 523 WNNVPSGDNTLSTEALQDKKKSEELTAHSK 552


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 143 YNRIMDLELDAFDSLTGLDCLTYLIHSFYQ*LCIHFL 33
           YN IM++    ++SL  L  L   ++ F+   CIH +
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVI 720


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 590  FGWGASCIGGHL-SCVALCEVVDAPEGINYQKPVSNEGDGLY 468
            F W       HL SCV  C+++   +  NY+ P+ ++   LY
Sbjct: 1106 FDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLDSKQGVLY 1147


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 157 LGYNSTIESWTWNWMPLIH*LDWIA 83
           L Y S +E  T+N  P+IH L +IA
Sbjct: 6   LDYLSALEDLTFNSKPIIHTLTYIA 30


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 347 MRVVSRKPTDNGFSLSH 397
           MR+ S  P+ NGFS++H
Sbjct: 457 MRLSSEPPSSNGFSIAH 473


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 608 VLSHLVLATGILHYPAKYSCFKC 676
           V+   +    +L YPA+  CF+C
Sbjct: 79  VIRPCICCNSVLRYPAQAMCFRC 101


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 512 SLRVHQPLRTRLHKISDLRYNSPPIRSLHDCE 607
           S+ +H   RT  H     R+N   I SL +CE
Sbjct: 165 SMDIHSRYRTEAHSDVTARFNERFILSLGNCE 196


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 70  IKYVRQSNPVNESKASNSKSMILLYCY-TLVLARAMSI 180
           +KY++  +   ESK SN    IL   Y + VLA A S+
Sbjct: 877 LKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSV 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,786
Number of Sequences: 5004
Number of extensions: 66523
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)