Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m23
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113...    29   3.5  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    29   4.6  

>04_01_0111 -
           1136354-1136793,1136878-1136959,1137574-1137657,
           1137749-1137931,1138263-1138437,1138539-1138777
          Length = 400

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 197 CSNIVLVDCWQSQW*--PITTRNREESIAICDVLANDENHHFYSNSLREISKMRV 355
           C+    VD + S W   P+ +RN + S+  C+VL     HH      REI+K+ V
Sbjct: 237 CNKPRRVDVYYSSWCIRPVESRNGDGSMTACEVLL---FHHEEMGIPREIAKLGV 288


>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
            4004474-4004556,4004661-4004775,4005309-4005400,
            4005558-4005612,4005689-4005834,4005888-4006001,
            4006149-4006342,4006985-4007112,4008526-4008583,
            4009800-4009876,4010214-4010263,4010336-4010515,
            4010633-4010731,4010816-4011133,4011221-4011281,
            4011693-4012781,4012951-4013005,4013133-4013291,
            4013923-4014442
          Length = 1406

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 636  PVARTKCDNTSQSWRLRMGGE 574
            P+A   CD+ S  W+LR GG+
Sbjct: 1096 PMANLLCDSFSDDWQLRSGGD 1116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,382,316
Number of Sequences: 37544
Number of extensions: 421330
Number of successful extensions: 952
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)