Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m23
(693 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006389-1|AAH06389.1| 323|Homo sapiens poly (ADP-ribose) polym... 76 1e-13
BC031074-1|AAH31074.1| 322|Homo sapiens poly (ADP-ribose) polym... 75 2e-13
AK000516-1|BAA91222.1| 207|Homo sapiens protein ( Homo sapiens ... 72 2e-12
D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein. 31 3.0
AL359763-3|CAI12394.1| 1724|Homo sapiens poly (ADP-ribose) polym... 31 3.0
AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein. 31 3.0
AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribos... 31 3.0
>BC006389-1|AAH06389.1| 323|Homo sapiens poly (ADP-ribose)
polymerase family, member 16 protein.
Length = 323
Score = 75.8 bits (178), Expect = 1e-13
Identities = 39/110 (35%), Positives = 62/110 (56%)
Frame = -2
Query: 668 NKNTSLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSCVALCEVVDAPEGINYQKPVS 489
NK + G G YL+ +LS + +S G GW S +G LSCVA+CEV+D P+ + Q
Sbjct: 172 NKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKK 230
Query: 488 NEGDGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLR 339
+ + + + H G+ ++VTN L+R++YLLVY+++P R
Sbjct: 231 DSKEIDRRRARIKHSE-GGDIPPKYFVVTNNQLLRVKYLLVYSQKPPKSR 279
>BC031074-1|AAH31074.1| 322|Homo sapiens poly (ADP-ribose)
polymerase family, member 16 protein.
Length = 322
Score = 74.9 bits (176), Expect = 2e-13
Identities = 38/106 (35%), Positives = 61/106 (57%)
Frame = -2
Query: 668 NKNTSLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSCVALCEVVDAPEGINYQKPVS 489
NK + G G YL+ +LS + +S G GW S +G LSCVA+CEV+D P+ + Q
Sbjct: 172 NKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKK 230
Query: 488 NEGDGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQP 351
+ + + + H G+ ++VTN L+R++YLLVY+++P
Sbjct: 231 DSKEIDRRRARIKHSE-GGDIPPKYFVVTNNQLLRVKYLLVYSQKP 275
>AK000516-1|BAA91222.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ20509 fis, clone KAT09623. ).
Length = 207
Score = 71.7 bits (168), Expect = 2e-12
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = -2
Query: 659 TSL-GNGVYLSPELSATIPHSHGGFGWGASCIGGHLSCVALCEVVDAPEGINYQKPVSNE 483
TSL G G YL+ +LS + +S G GW S +G LSCVA+CEV+D P+ + Q +
Sbjct: 59 TSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDS 117
Query: 482 GDGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQP 351
+ + + H G+ ++VTN L+R++YLLVY+++P
Sbjct: 118 KEIDRRRARIKHSE-GGDIPPKYFVVTNNQLLRVKYLLVYSQKP 160
>D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein.
Length = 1725
Score = 31.5 bits (68), Expect = 3.0
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = -2
Query: 656 SLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSC-VALCEVVDAPEGINYQKPVSNEG 480
+LG+G+Y S LS +I +SH G G + L C VAL + +D E ++ + G
Sbjct: 472 NLGSGIYFSDSLSTSIKYSHPGETDGTRLL---LICDVALGKCMDLHEK-DFSLTEAPPG 527
Query: 479 -DGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLR-FH 333
D ++ G + V + + +++V + V+++Y++ ++ ++ FH
Sbjct: 528 YDSVH--GVSQTASVTTDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFH 576
>AL359763-3|CAI12394.1| 1724|Homo sapiens poly (ADP-ribose)
polymerase family, member 4 protein.
Length = 1724
Score = 31.5 bits (68), Expect = 3.0
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = -2
Query: 656 SLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSC-VALCEVVDAPEGINYQKPVSNEG 480
+LG+G+Y S LS +I +SH G G + L C VAL + +D E ++ + G
Sbjct: 471 NLGSGIYFSDSLSTSIKYSHPGETDGTRLL---LICDVALGKCMDLHEK-DFSLTEAPPG 526
Query: 479 -DGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLR-FH 333
D ++ G + V + + +++V + V+++Y++ ++ ++ FH
Sbjct: 527 YDSVH--GVSQTASVTTDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFH 575
>AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein.
Length = 1724
Score = 31.5 bits (68), Expect = 3.0
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -2
Query: 656 SLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSC-VALCEVVDAPEGINYQKPVSNEG 480
+LG+G+Y S LS +I +SH G G + L C VAL + +D E P++
Sbjct: 471 NLGSGIYFSDSLSTSIKYSHPGETDGTRLL---LICDVALGKCMDLHE---KDFPLTEAP 524
Query: 479 DGLYK-DGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLR-FH 333
G G + V + + +++V + V+++Y++ ++ ++ FH
Sbjct: 525 PGYDSVHGVSQTASVTTDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFH 575
>AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribosyl)
transferase protein.
Length = 1724
Score = 31.5 bits (68), Expect = 3.0
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = -2
Query: 656 SLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSC-VALCEVVDAPEGINYQKPVSNEG 480
+LG+G+Y S LS +I +SH G G + L C VAL + +D E ++ + G
Sbjct: 471 NLGSGIYFSDSLSTSIKYSHPGETDGTRLL---LICDVALGKCMDLHEK-DFSLTEAPPG 526
Query: 479 -DGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLR-FH 333
D ++ G + V + + +++V + V+++Y++ ++ ++ FH
Sbjct: 527 YDSVH--GVSQTASVTTDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFH 575
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,146,805
Number of Sequences: 237096
Number of extensions: 2399317
Number of successful extensions: 7679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7676
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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