Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m23
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-1|CAA20974.1|  287|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF040655-1|AAK84577.2|  678|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AL031629-1|CAA20974.1|  287|Caenorhabditis elegans Hypothetical
           protein Y106G6D.1 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 455 SFHLYKVHHLHWRLAFGN*SLRVHQPLRTRLHKISDLRYNSP 580
           SF    VH L WR    + + RVH  L  R+ ++   R + P
Sbjct: 245 SFPASNVHELEWRYIMKSLNQRVHHKLYQRITRMPGDRNDKP 286


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 688 GLTTAFETRILRWVMEYTCRQN*VRQYLTVMEASDGGRVVSEVTYLV 548
           G TT F TRI  WV E  C  N  R  + ++   +  + V+  T+L+
Sbjct: 380 GKTTEFITRIALWVPESKCDTNMTRHAVCII-GLEHFQAVASFTHLM 425


>Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical
           protein F13D2.4 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 447 MISLSIFIKSITFIGDWLLVIDP 515
           MIS  + I S TF GDW L + P
Sbjct: 164 MISDQLEIPSHTFFGDWFLKVQP 186


>AF040655-1|AAK84577.2|  678|Caenorhabditis elegans Hypothetical
           protein T24E12.5 protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 497 PVSNEGDGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLRFHARNSN 318
           PV  + D  + + + DH  V+ E + ++ I    +++    L  YA+    L F+  N N
Sbjct: 180 PVFRKSDSYWYEPEKDHFYVSKEARNSESIRLTANVIPGETLKTYAELNEIL-FNQLNEN 238

Query: 317 RNG 309
           R G
Sbjct: 239 RTG 241



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 497 PVSNEGDGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLRFHARNSN 318
           PV  + D  + + + DH  V+ E + ++ I    +++    L  YA+    L F+  N N
Sbjct: 243 PVFRKSDSYWYEPEKDHFYVSKEARNSESIRLTANVIPGETLKTYAELNEIL-FNQLNEN 301

Query: 317 RNG 309
           R G
Sbjct: 302 RTG 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,642
Number of Sequences: 27780
Number of extensions: 373843
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)