Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m22
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       71   7e-13
02_04_0361 - 22359278-22359439,22362291-22362728                       71   9e-13
01_06_0783 + 31975261-31975398,31975583-31975726                       65   5e-11
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           58   5e-09
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     51   8e-07
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494...    29   5.0  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 27/53 (50%), Positives = 40/53 (75%)
 Frame = -1

Query: 662 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 504
           + +A  +KKEFDK Y PTWHCIVG ++GS+VTH    F+YF + ++ ++LFK+
Sbjct: 152 RQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = -1

Query: 662 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 504
           K +A  +KKEFD  Y P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 138 KRLALALKKEFDATYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = -1

Query: 662 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 507
           + IAA IKKEFD  + P W C+VG +FG Y TH    FIYF LG +  L+FK
Sbjct: 38  RSIAAHIKKEFDMIHGPGWQCVVGASFGCYFTHSKGSFIYFKLGALRFLVFK 89


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNF 582
           EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 76  EKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 576
           EKDI  +IK EFDK + PTWHCIVG NFG+
Sbjct: 88  EKDIVEYIK-EFDKNHGPTWHCIVGHNFGT 116


>11_01_0618 -
           4941906-4942118,4942231-4942343,4942534-4942651,
           4942762-4942881,4942964-4943101,4943392-4943517,
           4943659-4943847,4943951-4944238,4944344-4944374,
           4945014-4945216
          Length = 512

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 582 KITTHDAMPGRIVFLVKFFLDECSYVLFMLNFSS 683
           K+ T D  P    +L+KFF    +  +  LNFS+
Sbjct: 255 KVVTFDKNPDNHPYLLKFFQSSAAKAMLFLNFST 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,415,609
Number of Sequences: 37544
Number of extensions: 329954
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)