Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m22
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   123   1e-28
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    73   3e-13
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    66   3e-11
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    59   3e-09
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    59   3e-09
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   4.5  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   7.8  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  123 bits (296), Expect = 1e-28
 Identities = 53/55 (96%), Positives = 55/55 (100%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 501
           EKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 35  EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 15/22 (68%), Positives = 22/22 (100%)
 Frame = -2

Query: 724 EEMQQDAVDCATQALEKFNMKR 659
           ++MQQDA+DCATQALEK+N+++
Sbjct: 15  DDMQQDAIDCATQALEKYNIEK 36


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 29/54 (53%), Positives = 39/54 (72%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 504
           E DIA  +K  FD++Y P WHCI G++FGS+VT E   FIYF +G +A +LFK+
Sbjct: 87  EHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 501
           +KD+AAF+K+E DKK+  TWH I G+ FGS V++E  HFI     +V ++++K G
Sbjct: 35  DKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 23/53 (43%), Positives = 40/53 (75%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 507
           E +IA+F+K++FD KY   W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 79  ENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 23/53 (43%), Positives = 40/53 (75%)
 Frame = -1

Query: 665 EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 507
           E +IA+F+K++FD KY   W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 61  ENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 586 LRPTMQCQVGLYFLSN 633
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 586 LRPTMQCQVGLYFLSN 633
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 438 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 587
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,028
Number of Sequences: 27780
Number of extensions: 305750
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)