Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m17
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 32 0.024
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 29 0.22
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 29 0.22
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 2.7
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 2.7
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 25 3.6
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 24 4.7
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 24 6.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 6.3
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 24 6.3
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 24 6.3
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 23 8.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 23 8.3
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 23 8.3
>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 92
Score = 31.9 bits (69), Expect = 0.024
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = -1
Query: 225 RGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIYKYVEEAHHASL 46
+GI+ Y +SP +Q+ AG N R++ Y P I IY + +E +
Sbjct: 23 KGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNEFLN 82
Query: 45 RKDPRDFMDE 16
K R ++E
Sbjct: 83 SKHGRHLVEE 92
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.22
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Frame = -1
Query: 267 KFRMGKHFGELGFIRGIVY---YKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAI 97
++ + F E G IR Y YK+ GA+ KG+P+ + Y + +
Sbjct: 12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSS 71
Query: 96 IGTCIYK-----YVEE-----AHHASLRKDPRDFMDEVDPN 4
+G IYK Y+E+ H K +DF+D V N
Sbjct: 72 VGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKAN 112
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.22
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Frame = -1
Query: 267 KFRMGKHFGELGFIRGIVY---YKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAI 97
++ + F E G IR Y YK+ GA+ KG+P+ + Y + +
Sbjct: 12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSS 71
Query: 96 IGTCIYK-----YVEE-----AHHASLRKDPRDFMDEVDPN 4
+G IYK Y+E+ H K +DF+D V N
Sbjct: 72 VGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKAN 112
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 2.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -3
Query: 181 LCWCNYKRNPQFCDKNASNNC 119
LCWC + P+F ++C
Sbjct: 258 LCWCGKQEKPEFVKNLVPHSC 278
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 263 SEWENISVNWVSLEE 219
SEWE S+NW L++
Sbjct: 329 SEWEQHSLNWAKLDD 343
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 148 FCDKNASNNCVLVTTCNNRNMYLQICRRSASCI 50
FC+ S +C L N++ +IC +S C+
Sbjct: 27 FCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCL 59
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 4.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 269 ENSEWENISVNWVSLE---ELFIIKCLHMNKKP 180
+N E + N S E E F+ +C HMN++P
Sbjct: 23 DNDHKEELINNQKSFESNVEAFMEQCAHMNRRP 55
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 7 RINFIHKVPWVFSQRCMMRFFDIFV 81
RINF W+ R ++ FF +F+
Sbjct: 466 RINFPELNEWITLHRFVISFFTVFI 490
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 305 LIKEKVVLNLIKENSEWENIS 243
LIK KV + + K ++E++NI+
Sbjct: 2043 LIKSKVAIRVSKTSTEYDNIT 2063
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 178 IGFLFMWRHFIINNSSNETQFTE 246
+GF+ FI+N S N++ TE
Sbjct: 9 VGFICFLHFFIVNASDNKSLLTE 31
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 23.8 bits (49), Expect = 6.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 19 IHKVPWVFSQR 51
+HKVPW SQR
Sbjct: 16 VHKVPWRLSQR 26
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 23.4 bits (48), Expect = 8.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2
Query: 275 IKENSEWENISVNWVSL 225
+ NSEWEN+S ++ +
Sbjct: 149 LSSNSEWENVSKEFLEI 165
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 23.4 bits (48), Expect = 8.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 287 VLNLIKENSEWENISVNWVSLEELFIIKCLHMNKKPMLVQLQKESPI 147
V L +EN EW++ +++ L + LH +K + +L+K +PI
Sbjct: 448 VEQLYQENVEWDDAAIDRYYLLIHSTLPILHHSKARLKSELEK-API 493
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 23.4 bits (48), Expect = 8.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +1
Query: 31 PWVFSQRCMMRFFDIFVDTC 90
P+VF + C ++ D+F C
Sbjct: 53 PYVFFRECRAKYGDVFTFVC 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,329
Number of Sequences: 5004
Number of extensions: 25487
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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