Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m17
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 33 0.062
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 28 1.3
04_04_1345 + 32792879-32794207 27 4.1
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 26 7.1
10_08_0564 - 18816160-18816435 26 7.1
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 26 7.1
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 25 9.4
02_01_0679 - 5048653-5051394 25 9.4
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 32.7 bits (71), Expect = 0.062
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 19 IHKVPWVFSQRCMMRFFDIFVDTCSDYCRW*PVRNCC*HSCHKIGDSFCNCTSIGF 186
+ ++ WV S R RFF D C Y R P C SFC C GF
Sbjct: 282 VERLVWVASSRAWQRFFQGPRDPCDSYARCGPFGLC---DADAAATSFCGCVD-GF 333
>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
Length = 634
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 187 KSLCWCNYKRNPQFCDKNASNNCVLV 110
K L W ++ NP+ +N S+ C+L+
Sbjct: 432 KGLAWLHHSCNPRILHRNISSKCILL 457
>04_04_1345 + 32792879-32794207
Length = 442
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 87 CIYKYVEEAHHASLRKDPRDF 25
C ++ V+EAHH KDP F
Sbjct: 153 CDHRRVDEAHHLCFGKDPPPF 173
>11_04_0340 - 16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 281 NLIKENSEWENISVNWVSLEELFIIKCLHMNKKPMLVQLQK 159
NL+ ++E E + + + SLE L I +C + P+LV K
Sbjct: 1076 NLVSLSTEGERVLLGYTSLERLRIQRCPKL--MPLLVMSDK 1114
>10_08_0564 - 18816160-18816435
Length = 91
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 178 CWCNYKRNPQFCDK-NASNNCVLVTTC 101
C+C Y RNP + N++N +T+C
Sbjct: 58 CFCQYARNPAYASYINSANARKTLTSC 84
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 302 IKEKVVLNLIKENSEWENISV---NWVSLEELFIIKCLH 195
+ E V+N++ +SE+ENI V LE LF C H
Sbjct: 963 MNESEVINMVAHSSEFENIVVREEEQDELESLFKNACPH 1001
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 270 RKFRMGKHFGELGFIRGIVYYKMSPHEQKAYAGAITKGIPNFVT 139
RKFR H E+ V+ K++ + G++ + PN++T
Sbjct: 226 RKFRALSHGVEVENSSSKVFPKIATDSPVCWPGSVVRNYPNYLT 269
>02_01_0679 - 5048653-5051394
Length = 913
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 178 CWCNYK-RNPQFCDKNASNNCVLVTTCNN 95
CW N R P FC+ A+ + +T C N
Sbjct: 765 CWDNETFRRPVFCEYGANIKYLTLTFCKN 793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,103,945
Number of Sequences: 37544
Number of extensions: 151771
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -