Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m17
(315 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC090048-1|AAH90048.1| 82|Homo sapiens ubiquinol-cytochrome c ... 59 3e-09
BC001390-1|AAH01390.1| 82|Homo sapiens ubiquinol-cytochrome c ... 59 3e-09
D50369-1|BAA23321.1| 93|Homo sapiens low molecular mass ubiqui... 54 9e-08
BC075861-1|AAH75861.2| 322|Homo sapiens chromosome 10 open read... 29 2.2
AL513355-3|CAH71692.2| 322|Homo sapiens chromosome 10 open read... 29 2.2
AL356155-3|CAM22929.1| 322|Homo sapiens chromosome 10 open read... 29 2.2
Z72499-1|CAA96580.1| 1102|Homo sapiens herpesvirus associated ub... 28 6.6
AY376241-1|AAQ82908.1| 1112|Homo sapiens ubiquitin-specific prot... 28 6.6
>BC090048-1|AAH90048.1| 82|Homo sapiens ubiquinol-cytochrome c
reductase, complex III subunit VII, 9.5kDa protein.
Length = 82
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = -1
Query: 258 MGKHFGELGFIRGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIY 79
MG+ FG L +R ++ Y +SP EQ+AY TKGIPN + R+ + +P ++ IY
Sbjct: 1 MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60
Query: 78 KYVEEAHHASLRKDPRDFMDE 16
+ E S RK+P + ++
Sbjct: 61 TWGTEEFERSKRKNPAAYEND 81
>BC001390-1|AAH01390.1| 82|Homo sapiens ubiquinol-cytochrome c
reductase, complex III subunit VII, 9.5kDa protein.
Length = 82
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = -1
Query: 258 MGKHFGELGFIRGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIY 79
MG+ FG L +R ++ Y +SP EQ+AY TKGIPN + R+ + +P ++ IY
Sbjct: 1 MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60
Query: 78 KYVEEAHHASLRKDPRDFMDE 16
+ E S RK+P + ++
Sbjct: 61 TWGTEEFERSKRKNPAAYEND 81
>D50369-1|BAA23321.1| 93|Homo sapiens low molecular mass
ubiquinone-binding protein protein.
Length = 93
Score = 54.0 bits (124), Expect = 9e-08
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = -1
Query: 258 MGKHFGELGFIRGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIY 79
MG+ FG L +R ++ Y +SP EQ+AY TKGIPN + R+ + +P ++ IY
Sbjct: 1 MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60
Query: 78 KYVEEAHHASLRK 40
+ E S R+
Sbjct: 61 TWGTEEFERSKRR 73
>BC075861-1|AAH75861.2| 322|Homo sapiens chromosome 10 open reading
frame 130 protein.
Length = 322
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 91 SDYCRW*PVRNCC*HSCHKIGDSFCNCTSIGFLFMWRHFIINNSSNETQFTEMFSHSEFS 270
++Y W P C+K D FC S+ LF R+ N N T F +S+ S
Sbjct: 186 NEYLLWNPSTG----QCYKQFDPFCPLKSVDCLFDDRNVWFNIQQNNTPMAVFFDYSKES 241
Query: 271 LIK 279
K
Sbjct: 242 FWK 244
>AL513355-3|CAH71692.2| 322|Homo sapiens chromosome 10 open reading
frame 130 protein.
Length = 322
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 91 SDYCRW*PVRNCC*HSCHKIGDSFCNCTSIGFLFMWRHFIINNSSNETQFTEMFSHSEFS 270
++Y W P C+K D FC S+ LF R+ N N T F +S+ S
Sbjct: 186 NEYLLWNPSTG----QCYKQFDPFCPLKSVDCLFDDRNVWFNIQQNNTPMAVFFDYSKES 241
Query: 271 LIK 279
K
Sbjct: 242 FWK 244
>AL356155-3|CAM22929.1| 322|Homo sapiens chromosome 10 open reading
frame 130 protein.
Length = 322
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 91 SDYCRW*PVRNCC*HSCHKIGDSFCNCTSIGFLFMWRHFIINNSSNETQFTEMFSHSEFS 270
++Y W P C+K D FC S+ LF R+ N N T F +S+ S
Sbjct: 186 NEYLLWNPSTG----QCYKQFDPFCPLKSVDCLFDDRNVWFNIQQNNTPMAVFFDYSKES 241
Query: 271 LIK 279
K
Sbjct: 242 FWK 244
>Z72499-1|CAA96580.1| 1102|Homo sapiens herpesvirus associated
ubiquitin-specific protease (HAUSP) protein.
Length = 1102
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 148 FCDKNASNNCVLVTTCNNRNMYLQICRRSA 59
FCDK N+ V T +NR Y Q+ + A
Sbjct: 798 FCDKTIPNDPGFVVTLSNRMNYFQVAKTVA 827
>AY376241-1|AAQ82908.1| 1112|Homo sapiens ubiquitin-specific
protease 7 isoform protein.
Length = 1112
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 148 FCDKNASNNCVLVTTCNNRNMYLQICRRSA 59
FCDK N+ V T +NR Y Q+ + A
Sbjct: 808 FCDKTIPNDPGFVVTLSNRMNYFQVAKTVA 837
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,213,040
Number of Sequences: 237096
Number of extensions: 921900
Number of successful extensions: 2356
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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