Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m17
         (315 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113252-1|AAM29257.1|   89|Drosophila melanogaster AT13736p pro...    88   2e-18
AE014296-2915|AAF49336.1|   89|Drosophila melanogaster CG7580-PA...    88   2e-18
AY118992-1|AAM50852.1|  151|Drosophila melanogaster LP02725p pro...    28   2.2  
AY064174-1|AAL47186.1| 1984|Drosophila melanogaster rho GTPase g...    28   2.2  
AY060795-1|AAL28343.1|  599|Drosophila melanogaster GH26207p pro...    28   2.2  
AE014296-900|AAF47940.2| 1984|Drosophila melanogaster CG32239-PA...    28   2.2  
AE014134-567|AAN10384.1|  151|Drosophila melanogaster CG31698-PA...    28   2.2  
Y17920-1|CAA76940.1| 4116|Drosophila melanogaster CALO protein p...    27   3.8  
AF096897-1|AAD20450.1| 5322|Drosophila melanogaster pushover pro...    27   3.8  
AF096896-1|AAD20449.1| 4120|Drosophila melanogaster pushover pro...    27   3.8  
AE014134-1390|AAF52598.1| 5322|Drosophila melanogaster CG14472-P...    27   3.8  
AE014297-3339|AAF56145.1|  540|Drosophila melanogaster CG10168-P...    26   8.8  

>AY113252-1|AAM29257.1|   89|Drosophila melanogaster AT13736p
           protein.
          Length = 89

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 39/80 (48%), Positives = 53/80 (66%)
 Frame = -1

Query: 255 GKHFGELGFIRGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIYK 76
           G+HFG L  + GIV YK+SP EQ+A+AGAI+KG+PN V R  + +    PP I+G  IY 
Sbjct: 9   GQHFGNLAKVHGIVTYKLSPFEQRAFAGAISKGLPNMVRRFRSNVFIVTPPFIVGYLIYD 68

Query: 75  YVEEAHHASLRKDPRDFMDE 16
             E  H A LRK+P D+ ++
Sbjct: 69  LTERKHTALLRKNPADYAND 88


>AE014296-2915|AAF49336.1|   89|Drosophila melanogaster CG7580-PA
           protein.
          Length = 89

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 39/80 (48%), Positives = 53/80 (66%)
 Frame = -1

Query: 255 GKHFGELGFIRGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIYK 76
           G+HFG L  + GIV YK+SP EQ+A+AGAI+KG+PN V R  + +    PP I+G  IY 
Sbjct: 9   GQHFGNLAKVHGIVTYKLSPFEQRAFAGAISKGLPNMVRRFRSNVFIVTPPFIVGYLIYD 68

Query: 75  YVEEAHHASLRKDPRDFMDE 16
             E  H A LRK+P D+ ++
Sbjct: 69  LTERKHTALLRKNPADYAND 88


>AY118992-1|AAM50852.1|  151|Drosophila melanogaster LP02725p
           protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -3

Query: 160 RNPQFCDKNASNNCVLVTTCNNRNMYLQICRRSASCIFEKRPKGLYG 20
           +NP  CD    N C+L + C     +  +C+     I E   +   G
Sbjct: 67  QNPGPCDSKPVNRCILDSHCGKGVAFYFVCKSDCELIKENEARQAAG 113


>AY064174-1|AAL47186.1| 1984|Drosophila melanogaster rho GTPase
            guanine nucleotideexchange factor GEF64C protein.
          Length = 1984

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 311  AKLIKEKVVLNLIKENSEWENISVNWVSLEELFIIKCLHMNKKPMLV-QLQKESP 150
            A L KEK +L +  + S+ EN  +  ++L    ++    + K P+L+ +L K +P
Sbjct: 1700 ANLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTP 1754


>AY060795-1|AAL28343.1|  599|Drosophila melanogaster GH26207p
           protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 311 AKLIKEKVVLNLIKENSEWENISVNWVSLEELFIIKCLHMNKKPMLV-QLQKESP 150
           A L KEK +L +  + S+ EN  +  ++L    ++    + K P+L+ +L K +P
Sbjct: 315 ANLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTP 369


>AE014296-900|AAF47940.2| 1984|Drosophila melanogaster CG32239-PA
            protein.
          Length = 1984

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 311  AKLIKEKVVLNLIKENSEWENISVNWVSLEELFIIKCLHMNKKPMLV-QLQKESP 150
            A L KEK +L +  + S+ EN  +  ++L    ++    + K P+L+ +L K +P
Sbjct: 1700 ANLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTP 1754


>AE014134-567|AAN10384.1|  151|Drosophila melanogaster CG31698-PA
           protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -3

Query: 160 RNPQFCDKNASNNCVLVTTCNNRNMYLQICRRSASCIFEKRPKGLYG 20
           +NP  CD    N C+L + C     +  +C+     I E   +   G
Sbjct: 67  QNPGPCDSKPVNRCILDSHCGKGVAFYFVCKSDCELIKENEARQAAG 113


>Y17920-1|CAA76940.1| 4116|Drosophila melanogaster CALO protein
           protein.
          Length = 4116

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 22  HKVPWVFSQRCMMRFFDIFVDTCSDYCRW*PVRNC 126
           H+  W+   RC++ +FD+ + + ++ C    +  C
Sbjct: 723 HQDQWLLVVRCILEYFDLLLPSINENCMLYSIVGC 757


>AF096897-1|AAD20450.1| 5322|Drosophila melanogaster pushover protein.
          Length = 5322

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 22   HKVPWVFSQRCMMRFFDIFVDTCSDYCRW*PVRNC 126
            H+  W+   RC++ +FD+ + + ++ C    +  C
Sbjct: 1929 HQDQWLLVVRCILEYFDLLLPSINENCMLYSIVGC 1963


>AF096896-1|AAD20449.1| 4120|Drosophila melanogaster pushover protein.
          Length = 4120

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 22   HKVPWVFSQRCMMRFFDIFVDTCSDYCRW*PVRNC 126
            H+  W+   RC++ +FD+ + + ++ C    +  C
Sbjct: 1929 HQDQWLLVVRCILEYFDLLLPSINENCMLYSIVGC 1963


>AE014134-1390|AAF52598.1| 5322|Drosophila melanogaster CG14472-PA
            protein.
          Length = 5322

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 22   HKVPWVFSQRCMMRFFDIFVDTCSDYCRW*PVRNC 126
            H+  W+   RC++ +FD+ + + ++ C    +  C
Sbjct: 1929 HQDQWLLVVRCILEYFDLLLPSINENCMLYSIVGC 1963


>AE014297-3339|AAF56145.1|  540|Drosophila melanogaster CG10168-PA
           protein.
          Length = 540

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 174 GAITKGIPNFVTRMLATIAYWLPPAIIGTCIYKYVEEAHHASL 46
           G +   +PN +   +A +    PP   G  + KY++EA H ++
Sbjct: 256 GRVRANVPNIIE--VAGVHLSEPPEPCGAELQKYLDEAEHGAI 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,990,469
Number of Sequences: 53049
Number of extensions: 281189
Number of successful extensions: 746
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 631882260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)