Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m16
(270 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 1.4
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 2.5
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 24 3.2
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 24 3.2
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 5.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 5.7
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 23 5.7
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 23 5.7
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 23 7.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 23 7.5
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 23 7.5
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 23 7.5
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.9
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.9
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 23 9.9
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 128 EQRATNTTVLSCKSLHQHIQAVTLKLCNAME 36
EQ+A + + S +H+H+ VTL+ NA +
Sbjct: 283 EQQALSHMIYSHPIVHKHVGLVTLRSINAYD 313
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 2.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 82 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 201
CK Q+S +V+ G+GA+M D+ ++ + + N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 152 TCISAPLPEQRATNTTVLSCKSLHQHIQAVTLKLCNAMERFL 27
TCI+ LPE + VL Q++ A +KLC A F+
Sbjct: 187 TCINL-LPESLFLSINVLDRFLSLQNVPASKMKLCGATALFI 227
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.2 bits (50), Expect = 3.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 79 NIYRLLHSNYVTQWSDFYS 23
N+Y H V +WS F+S
Sbjct: 530 NVYNSFHDRRVWRWSTFFS 548
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 5.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 82 CKDLQDSTVVLVARCSGKGAEMQV 153
C+ +QD+ V++V +G G Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 193 PPVCSPPDCRPICGPASPLLCQSSVP 116
PPV +PP P P+ P S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 198 IVHQS-VHLRIVVRSVDLHLRSFARAACHQH 109
I+H S VH+ + S D+ + ++ +A H H
Sbjct: 63 IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLH 93
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 139 LLCQSSVPPTQR 104
LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 144 LRSFARAACHQHNGAIL*ILASTYTG 67
LR+F+R+AC+ + A TY G
Sbjct: 13 LRTFSRSACYSFRFSSTKAAAGTYEG 38
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 23.0 bits (47), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 145 SPLLCQSSVPPTQRCYPVNPCINIYRLLHSN 53
S LL S P+Q YP+ CI + + SN
Sbjct: 605 SVLLNVFSSTPSQYRYPILKCIQTWIFISSN 635
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.0 bits (47), Expect = 7.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 193 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIY 71
PP + P +C + L C +S P T R + +N I ++
Sbjct: 71 PPTLTGPTSNRVCNALALLQCIASHPET-RIHFLNAHITLF 110
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 137 PLPEQRATNTTVLSCKSLHQHIQ 69
PLPE+ + + C L+ H+Q
Sbjct: 395 PLPEEEMSKLHIERCARLYPHMQ 417
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 163 DDNPEVNRLVDNNPFFTFLI 222
D N +NR+VD P ++L+
Sbjct: 398 DQNQLINRIVDKLPDLSYLV 417
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 86 RIYRIAPLCWWHAALAK 136
R Y PLC WH + A+
Sbjct: 102 RTYLEVPLCRWHISQAR 118
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -3
Query: 121 VPPTQRCYPVNPCINIYRLLHSNYV 47
V P + P + ++YRL+H N +
Sbjct: 316 VKPYYKVQPFSTLPDVYRLMHENKI 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,656
Number of Sequences: 5004
Number of extensions: 20084
Number of successful extensions: 60
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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