Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m14
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.043
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 29 0.71
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 29 0.71
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 0.94
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 28 1.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 3.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 3.8
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 5.0
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 5.0
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 5.0
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 6.6
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 6.6
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 6.6
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 26 6.6
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 6.6
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 26 6.6
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 6.6
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 26 6.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.7
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 8.7
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 25 8.7
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 33.1 bits (72), Expect = 0.043
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -1
Query: 322 NSEPKKSTTTIDCRTDDSTLELSFENRTDTSDVQESSNVEIE-TCGVEKIEKLTKYLQAT 146
N+ P S ++ T + T++ + +T +SD+ E ++EI C E EKLT LQ+
Sbjct: 121 NTLPSVSASSQSVETCE-TVDEDIDTQTMSSDMSEVQSMEISLNCDHEFFEKLTSELQSV 179
Query: 145 GAGEREWKNFDGNVI 101
+RE + N I
Sbjct: 180 EGLQREQRKILFNAI 194
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 217 SSNVEIETCGVEKIEKLTKYLQATGAGEREWKNFDG--NVISESLNGWIDLQKGKTSDCL 44
+S++EIET + K+ + A G E +NFDG + ++ S G + Q + D +
Sbjct: 236 ASSMEIETPDLLKLPHEDRTQSAYNQGSEETQNFDGPPSAVTFSSIGGLQAQIAQIRDIV 295
Query: 43 SCLWQN 26
+QN
Sbjct: 296 ELPFQN 301
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.1 bits (62), Expect = 0.71
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 676 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTV--PSSN--IHICYGQVFCEPC 524
C +C + + +++ + +HS C KC C+ PSS Q+FC+ C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 460 EQFADPRFAENMKQFMAGKDGAP 392
E DP F EN KQ++ K G+P
Sbjct: 266 EYLNDPDFEENRKQYLQNKSGSP 288
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 538 FCEPCFQHHVLHRHKDNPN 482
FC PC + LH HKDNPN
Sbjct: 17 FCGPCRR---LHYHKDNPN 32
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 699 KGILNAASALDAFK*STRITKLKLTSRPSIVTVP-SAIFATRFHRPTSTSAMVKSSASLA 523
KG+ NAAS+ +F S I+K TSR S +P S + A + +KS
Sbjct: 621 KGVSNAASSKQSFPSSPSISKKLETSRLSTKKLPGSTMKAASALKEYPQQQSMKSGGEKQ 680
Query: 522 SNITSCT 502
N+ + T
Sbjct: 681 DNLVTIT 687
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 654 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 484
ST I ++ P TVP S + P STS+ SS+ L S TSCT + P
Sbjct: 288 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 654 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 484
ST I ++ P TVP S + P STS+ SS+ L S TSCT + P
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 567 PTSTSAMVKSSASLASNITSCTDIRTTPMXXXXXXXXXSRTPDLP 433
PTSTS+ +S L + TSCT + P TP +P
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 567 PTSTSAMVKSSASLASNITSCTDIRTTP 484
PTSTS+ +S+ L + TSCT + P
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 236
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 567 PTSTSAMVKSSASLASNITSCTDIRTTP 484
PTSTS+ +S+ L + TSCT + P
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 292
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 736 DNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA 617
D+P +S E+ EG+ + S+ S +++++ E +KQA
Sbjct: 557 DSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQA 596
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +3
Query: 135 SPAPVACKYFVSFSIFSTPHVSISTLLDSWTSDVSVRFSKDSSKVESSVLQSMVVVDFFG 314
SP+ ++ S +I S+P S S+L+ S +S +S S SS + S++ S + +
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSI-STIPISSSLSTYSS 668
Query: 315 SLLPNHS 335
S++P+ S
Sbjct: 669 SVIPSSS 675
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 265 LELSFENRTDTSDVQESSNVEIETCGVEKIEKLTKYL 155
LEL F + + + ++ N+E++T KIE++ YL
Sbjct: 31 LELLFRKQCEDTFTLQAINIEVDTQDENKIEEVRIYL 67
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +3
Query: 120 FFHSLSPAPVACKYFVSFSIFSTPHVSISTLLD 218
FF AP+ +F+ + I+ H+ + LD
Sbjct: 518 FFQGYLAAPIVIAFFIGYKIYDRSHIPSLSKLD 550
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 120 FFHSLSPAPVACKYFVSFSIFSTPHVSISTLLDSWT 227
FF APV +F+ + I+ H+ LD T
Sbjct: 514 FFQGYLAAPVTLAFFIGYKIYDRSHIPSLDKLDITT 549
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 99 EMTFPSKFFHSLSPAPVACKYFVSFSIFSTPHVSISTLLDSW 224
E++ H+ SP P YF+S + VS+ LL W
Sbjct: 167 ELSPKEVILHTFSPPPKRANYFLSICFSVSVVVSLIGLLGVW 208
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 18 HSQFCHKQL----KQSDVFPFCKSIQPFKDSEMTFPSKFFH 128
H Q ++QL K+ PF ++ P+++ ++TFPS FFH
Sbjct: 302 HLQLENEQLRLFFKEKAPQPF-QNHPPYQNLKITFPSPFFH 341
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 146 GRLQVFRQFFNFFNSTRFNLYIARFLD 226
GRL+ R FFN S F+L + R LD
Sbjct: 321 GRLKPLRCFFNDDISYNFHLLLGRLLD 347
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 189 PHVSISTLLDS-WTSDVSVRFSKDSSKVESSV---LQSMVVVDFFGSLLPNH 332
P I T LD ++S +S+ SS S + L ++ +VDF G +L NH
Sbjct: 264 PQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENH 315
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 62 SLLQVNPAV*RFRNDIPVEILPF 130
S +QVNPA +R++ PVEI+ +
Sbjct: 268 SHMQVNPAFREYRSNRPVEIVQY 290
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 101 NDIPVEILPFPFARAGRLQVFRQFFNFFN 187
ND+P+ ++ F R+G+L QF N ++
Sbjct: 388 NDVPLWVVLFYLMRSGQLDAALQFVNTYS 416
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 160 ISSVFQFFQLHTFQSLHC*IPGRPMYPCDSQKTALKSNHRFYSLW 294
I +F +F +H FQ LH + P Y L N R + W
Sbjct: 147 IYPLFHYFYIHIFQVLHLYLLASPTY-----IAMLAGNERAFGAW 186
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 189 PHVSISTLLDSWTSDVSVRFSKDSSKVESSVLQSMV 296
PH +ISTL +D S SK +S ++ +++V
Sbjct: 183 PHSTISTLSTVSINDTSASLSKTTSPTAGTITETIV 218
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 45 KQSDVFPFCKSIQPFKDSEMTFP 113
K F F +SIQ FKDSE P
Sbjct: 177 KFESFFGFVRSIQSFKDSETGLP 199
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 163 KYLQATGAGEREWKNFDGNVISESLNGW 80
+Y G+ EW+ +DGN +L+GW
Sbjct: 881 RYSLDFGSTWTEWQTYDGNNTYCNLSGW 908
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 277 DDSTLELSFENRTDTSDVQESSNVEIET-CGVEKIEKLTK 161
DD+TLE+ EN D S E ++++ + ++E++ K
Sbjct: 154 DDNTLEIEVENPADVSKDAEIKKLKLQNQLLISQLEEIRK 193
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 400 GAPFVFMQGQQPPFCRCGTGPQ 335
G P F +G+ P F CG PQ
Sbjct: 251 GVPVEFKEGEIPIFWGCGVTPQ 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,924
Number of Sequences: 5004
Number of extensions: 75816
Number of successful extensions: 291
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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