Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m14
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 34 0.14
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 1.3
12_02_1243 + 27300978-27301682 30 2.3
03_05_0677 + 26663880-26664581 30 2.3
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 30 2.3
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 29 3.0
03_02_0454 + 8626832-8627134,8627255-8627606,8627705-8627748,862... 29 3.0
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 29 3.9
08_02_1231 + 25427242-25427415,25428418-25428492,25428595-25428648 29 5.2
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 29 5.2
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 29 5.2
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 29 5.2
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 6.9
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 28 6.9
05_05_0173 + 22956927-22958615 28 6.9
11_01_0674 - 5502275-5502954,5503054-5504746 28 9.1
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 28 9.1
08_02_1304 - 26008105-26009070 28 9.1
01_06_1224 - 35508842-35510404 28 9.1
01_06_0195 + 27379266-27379300,27379870-27382174 28 9.1
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 676 CSRCLQMINENNKIEIDKQAFHSHCAKCYFC-HTVPSSNIHICYGQVFCEPCFQ 518
C C + + +++ D FH C KC C T+ N G +C+P F+
Sbjct: 9 CKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFE 62
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 676 CSRCLQMINENNKIEIDKQAFHSHCAKCYF--CHTVPSSNIHICYGQVFCEPCFQHHVLH 503
C+ C + K+ ++ QA+H C KC C P SN G ++C+ F L
Sbjct: 108 CATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISP-SNYAALEGILYCKHHFSQ--LF 164
Query: 502 RHKDNPNEFFK 470
+ K + N K
Sbjct: 165 KEKGSYNHLIK 175
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 520 QHHVLHRHKDNPNEFFKQCFEQ----FADPRFAENMKQFMAGKDGAPF 389
QH+ ++HK N +++Q EQ D R E++ Q A + GAPF
Sbjct: 23 QHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQVGAPF 70
>12_02_1243 + 27300978-27301682
Length = 234
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 598 KCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNP 485
+C C +P I G +FC PC + LH H +P
Sbjct: 24 ECNICFELPQEPIVTLCGHLFCWPCL-YKWLHIHSHSP 60
>03_05_0677 + 26663880-26664581
Length = 233
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 598 KCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNP 485
+C C +P I G +FC PC + LH H +P
Sbjct: 23 ECNICFELPQEPIVTLCGHLFCWPCI-YRWLHIHAHSP 59
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 616 FHSHC-AKCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNPNEFFKQC 464
++S C +C C P G ++C PC ++L +D E +K+C
Sbjct: 224 YYSPCEVQCPICLESPLCPQITSCGHIYCFPCILRYLLMGKEDYKGESWKKC 275
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 367 PPFCRCGTGPQEWFGNSEPKKSTTTIDCRTDDSTLELSFENRTDTSD 227
PP CRC PQ W + ++ T D DD L+L +T+D
Sbjct: 45 PPACRCRATPQ-WQLDFLGAEADTEADGGDDDDDLDLDLSLPAETND 90
>03_02_0454 +
8626832-8627134,8627255-8627606,8627705-8627748,
8629014-8629035,8629136-8629350,8629468-8629592,
8629681-8629756
Length = 378
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 481 EFFKQCFEQFADPRFAENMKQFM 413
EFFK+C+ A P AE K F+
Sbjct: 149 EFFKKCYSDIAGPEHAEKWKTFI 171
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -1
Query: 331 WFGNSEPKKSTTTIDCRTDDSTLELSFENRTDTSDVQESSNVEIETCGVEKIEKLTKYLQ 152
W EP ST T + L S + + ++ I C ++K+E TKY
Sbjct: 76 WVTTIEPGSSTVLYG--TSEDNLNFSADGKHTQYTFYNYTSGYIHHCTIKKLEFDTKYYY 133
Query: 151 ATGAGE 134
A G G+
Sbjct: 134 AVGIGQ 139
>08_02_1231 + 25427242-25427415,25428418-25428492,25428595-25428648
Length = 100
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 422 AIYGWQGWCPVCFYARATTAILSLWYRPAR 333
A+ G +GW + +A A T LW RPAR
Sbjct: 22 ALGGLRGWSNLASWAVAGTLAYYLWVRPAR 51
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 535 CEPCFQHHVLHRHKDNPNEFFKQCFEQFADPRFAENMKQFMA 410
C CF +++H D E +KQ FE+ DP A +A
Sbjct: 3239 CRACFSQDAVNKHVDFVKE-YKQDFERDLDPESATTFPATLA 3279
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 742 RGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKC 593
+ D A SK ++ T+ C+ C + + K+ ++ +++H C KC
Sbjct: 85 KSDQGRAPSKLSSAFSGTQDK-CAACQKTVYPLEKLTLEGESYHKSCFKC 133
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 676 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCH-TVPSSNIHICYGQVFCEPCFQ 518
C C + ++ + + D ++H C KC C T+ N G ++C+ F+
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFE 63
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 127 WKNFDGNVISESLNGWIDLQKGKTSDCLSCLWQ 29
WK +G V ++ W+D+ KG ++ + LW+
Sbjct: 85 WKECNGRVFNQQQRTWVDIVKGMAAE--TALWR 115
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 407 QGWCPVCFYARATTA 363
Q +CPVCFY +AT A
Sbjct: 628 QFYCPVCFYTKATEA 642
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 598 KCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNP 485
KC C P + +FC PC Q ++ RH+ P
Sbjct: 736 KCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCP 773
>05_05_0173 + 22956927-22958615
Length = 562
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -1
Query: 598 KCYFCHTVPSSNIHICYGQVFCEPCFQH--HVLHRHKDNP 485
+C C + S + G +FC PC HV HK+ P
Sbjct: 237 ECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECP 276
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = -1
Query: 394 PFVFMQGQQPPFCRCGTG-----PQEW--FGNSEPKKSTTTIDCRTDDSTLEL 257
PF G + PFC C G PQ+W + T +DC ++ S++++
Sbjct: 334 PFGVCDGSRKPFCDCMEGFSPKSPQDWELMDRTAGCFRNTPLDCSSNRSSIDM 386
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 407 QGWCPVCFYARATTA 363
Q +CPVCFY +AT A
Sbjct: 617 QLYCPVCFYTKATEA 631
>08_02_1304 - 26008105-26009070
Length = 321
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 448 DPRFAENMKQFMAGKDGAPFVFMQGQQPPFCRCGTGPQEWFG 323
DP+ + F+ GKDG P F ++ C +WFG
Sbjct: 65 DPKIKVIFEAFLIGKDGTPSSF-HAKRTMQCWASQDGYDWFG 105
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 634 EIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPCFQH--HVLHRHKDNP 485
E ++Q + +C C + S + G +FC PC +V HK+ P
Sbjct: 181 ESEEQGRSAATFECNICFDMASEPVVTSCGHLFCWPCLYQWLNVYSNHKECP 232
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 HSLSPAPVACKYFVSFSIFSTPHVSISTLLDSWTSDVSVRFSKDSSKVESSVLQSMVVVD 305
H L C++ SF P + + W+ FSK+ SK+E + D
Sbjct: 276 HGLCGENGICEFLPSFKCSCPPGYEMRDPTN-WSRGCRPLFSKNCSKIEEYEFFKLAQTD 334
Query: 306 FFG-SLLPNHS 335
F+G L+ N S
Sbjct: 335 FYGFDLIINQS 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,051,011
Number of Sequences: 37544
Number of extensions: 523806
Number of successful extensions: 1755
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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