Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m13
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   0.74 
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    27   0.98 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   3.0  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.1  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 348 KRYFLYFENIYRMGFFFSIVKTSI-IFGAGVYTGV 247
           K  FL F+N+  + F F ++  SI IFG  V  G+
Sbjct: 103 KNIFLQFQNVANLFFLFLVILQSISIFGEQVNPGL 137


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 178 GYGKKEMIEKVEDPKALFEKAQAFVKSKLSEVQ 80
           GYG+K M++ +E  K  F  ++ FV S     Q
Sbjct: 89  GYGRKLMLQALETSKQEFSSSKTFVLSSQEYAQ 121


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 372 TKNVLNNTKRYFLYFENIYRMGFFFSIVKTSIIFG 268
           T+ +L   K+Y   F N+Y    F SIV+  +  G
Sbjct: 372 TEMILPLVKQYDHKFRNLYSPNIFLSIVQALVFCG 406


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 247 LCSTKLSGCSPSNLSEICTEL 185
           LCSTK+S  +  +L E+C  +
Sbjct: 100 LCSTKVSTYTTPSLIEVCNRI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,104
Number of Sequences: 5004
Number of extensions: 21960
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)