Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m13
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906           28   2.1  
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544...    27   3.7  
07_01_0126 - 947072-948687,949454-949627,950117-951572                 27   4.9  
12_01_0198 - 1461305-1463812                                           27   6.5  
11_01_0192 - 1523572-1526097                                           27   6.5  
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    27   6.5  
07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883     26   8.6  

>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
          Length = 618

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 345 RYFLYFENIYRMGFFFSIVKTSIIFGAGVYT 253
           R+ LY+ +I     +FS + T I F  G+YT
Sbjct: 537 RFLLYYRSITMKLMWFSYMATIIAFATGLYT 567


>02_01_0726 +
           5440341-5440661,5441574-5441620,5442917-5442977,
           5442978-5443035,5443303-5443463,5443692-5443808,
           5443888-5443989,5444834-5444908,5444996-5445084,
           5445171-5445220,5445562-5445641,5445744-5445953,
           5446103-5446170,5446363-5446423,5446719-5447081
          Length = 620

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 342 YFLYFENIYRMGFFFSIVKT 283
           +F+ F+N + MGFFF ++ T
Sbjct: 440 HFILFQNSFEMGFFFWVLAT 459


>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 19  ITILFHNSCSHFPNFNLFFHLVLQKVLISRKL 114
           + ++F NSC H        HL+L K L  R++
Sbjct: 718 VFVMFLNSCPHLCRQPYSMHLLLDKCLFGRQM 749


>12_01_0198 - 1461305-1463812
          Length = 835

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 306 SPFYIYFQNTRNIFWCCSR 362
           +P+Y Y+QN RNI++  +R
Sbjct: 217 NPYYSYWQNNRNIYYNFTR 235


>11_01_0192 - 1523572-1526097
          Length = 841

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 306 SPFYIYFQNTRNIFWCCSR 362
           +P+Y Y+QN RNI++  +R
Sbjct: 216 NPYYSYWQNNRNIYYNFTR 234


>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 294 IVKTSIIFGAGVYTGVYVAQNY 229
           + K S  F  G+  GVYVAQNY
Sbjct: 3   LFKGSFTFMVGMGCGVYVAQNY 24


>07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883
          Length = 245

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 293 IEKKKPILYIFSKYKKYLLVLFKTF 367
           +EK KP +  F +   Y+L +FK+F
Sbjct: 8   VEKHKPDVIFFQEITPYILRIFKSF 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,524,767
Number of Sequences: 37544
Number of extensions: 113712
Number of successful extensions: 337
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)