Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m13
         (378 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024253-1|ABC86315.1|   71|Drosophila melanogaster IP15859p pro...    38   0.006
AE014296-3727|AAO41288.1|   98|Drosophila melanogaster CG33170-P...    37   0.007
D13887-1|BAA02987.1|  933|Drosophila melanogaster hikaru genki t...    27   6.1  
D13886-1|BAA02986.1|  958|Drosophila melanogaster hikaru genki t...    27   6.1  
D13885-1|BAA02985.1|  866|Drosophila melanogaster hikaru genki t...    27   6.1  
D13884-1|BAA02984.1|  891|Drosophila melanogaster hikaru genki t...    27   6.1  

>BT024253-1|ABC86315.1|   71|Drosophila melanogaster IP15859p
           protein.
          Length = 71

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -1

Query: 294 IVKTSIIFGAGVYTGVYVAQNYQ 226
           ++K  + FGAGVYTG+YV+QNY+
Sbjct: 1   MLKFLLTFGAGVYTGIYVSQNYE 23


>AE014296-3727|AAO41288.1|   98|Drosophila melanogaster CG33170-PA
           protein.
          Length = 98

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 13/20 (65%), Positives = 19/20 (95%)
 Frame = -1

Query: 285 TSIIFGAGVYTGVYVAQNYQ 226
           +++ FGAGVYTG+YV+QNY+
Sbjct: 51  STLTFGAGVYTGIYVSQNYE 70


>D13887-1|BAA02987.1|  933|Drosophila melanogaster hikaru genki
           type4 product precursorprotein.
          Length = 933

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 259 LHRCLCSTKLSGCSPSNLSEICTEL*QGYGKKEMIEKVEDPK--ALFEKAQAFVKSKLSE 86
           LH+     +L+ C      E CT L +   KK+++EK +  K    F K +   +  L  
Sbjct: 235 LHKLKMKARLNKCLAEGGKEKCTRLLKKKPKKKVVEKEQTLKKEKKFPKEEQSKEKVLEN 294

Query: 85  VQDGKKD 65
            Q  K+D
Sbjct: 295 GQTPKED 301


>D13886-1|BAA02986.1|  958|Drosophila melanogaster hikaru genki
           type3 product precursorprotein.
          Length = 958

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 259 LHRCLCSTKLSGCSPSNLSEICTEL*QGYGKKEMIEKVEDPK--ALFEKAQAFVKSKLSE 86
           LH+     +L+ C      E CT L +   KK+++EK +  K    F K +   +  L  
Sbjct: 235 LHKLKMKARLNKCLAEGGKEKCTRLLKKKPKKKVVEKEQTLKKEKKFPKEEQSKEKVLEN 294

Query: 85  VQDGKKD 65
            Q  K+D
Sbjct: 295 GQTPKED 301


>D13885-1|BAA02985.1|  866|Drosophila melanogaster hikaru genki
           type2 product precursorprotein.
          Length = 866

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 259 LHRCLCSTKLSGCSPSNLSEICTEL*QGYGKKEMIEKVEDPK--ALFEKAQAFVKSKLSE 86
           LH+     +L+ C      E CT L +   KK+++EK +  K    F K +   +  L  
Sbjct: 235 LHKLKMKARLNKCLAEGGKEKCTRLLKKKPKKKVVEKEQTLKKEKKFPKEEQSKEKVLEN 294

Query: 85  VQDGKKD 65
            Q  K+D
Sbjct: 295 GQTPKED 301


>D13884-1|BAA02984.1|  891|Drosophila melanogaster hikaru genki
           type1 product protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 259 LHRCLCSTKLSGCSPSNLSEICTEL*QGYGKKEMIEKVEDPK--ALFEKAQAFVKSKLSE 86
           LH+     +L+ C      E CT L +   KK+++EK +  K    F K +   +  L  
Sbjct: 235 LHKLKMKARLNKCLAEGGKEKCTRLLKKKPKKKVVEKEQTLKKEKKFPKEEQSKEKVLEN 294

Query: 85  VQDGKKD 65
            Q  K+D
Sbjct: 295 GQTPKED 301


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,590
Number of Sequences: 53049
Number of extensions: 210856
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)