Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m13
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    29   1.1  
AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   5.9  
Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AF067211-10|AAY55842.1|   50|Caenorhabditis elegans Hypothetical...    26   7.8  

>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 199 ICTEL*QGYGKKEMIEKVEDPKALFEKAQAF 107
           IC +   G    ++ + VEDP +++E+++AF
Sbjct: 230 ICFDYCNGKNSPDLFDDVEDPMSIYEESEAF 260


>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 285 TSIIFGAGVYTGVYVAQNYQDAVQVICQKSVQN 187
           TSI+ G G Y G+ +   +++   ++C  + +N
Sbjct: 101 TSIVMGIGAYMGISIVSIFENRFYIVCDFAFKN 133


>AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical
           protein C35E7.9 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 169 KKEMIEKVEDPKALFEKAQAFVKSKLSEVQDGKKD 65
           KKE  +K E+PK   EK +   KSK SE +D KK+
Sbjct: 59  KKEEPKKEEEPKKEEEKKE---KSKKSEKKDDKKE 90


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 10  KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 117
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 744 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 10  KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 117
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 744 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 10  KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 117
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 697 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 731


>Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical
           protein C08F8.9 protein.
          Length = 55

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 348 KRYFLYFENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQDAV 217
           K  F     +Y   FF+S+ K  I FG GV     V++ +   V
Sbjct: 12  KTRFEIVNTVYNDPFFWSVFKGVIGFGVGVVVARSVSEEWATVV 55


>AF067211-10|AAY55842.1|   50|Caenorhabditis elegans Hypothetical
           protein B0205.12 protein.
          Length = 50

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 279 IIFGAGVYTGVYVAQNYQ 226
           +  G G Y G Y AQNY+
Sbjct: 8   LTMGLGAYAGAYFAQNYE 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,242,577
Number of Sequences: 27780
Number of extensions: 124232
Number of successful extensions: 396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)