Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m13
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   8.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   8.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 216  GLHPDNFVLH 245
            GLHP+N +LH
Sbjct: 1729 GLHPNNTLLH 1738


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 216  GLHPDNFVLH 245
            GLHP+N +LH
Sbjct: 1725 GLHPNNTLLH 1734


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 290 TIEKKKPILYIFSKYKKY 343
           T++K KP +Y +   +KY
Sbjct: 145 TVDKSKPKVYQWFDLRKY 162


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 290 TIEKKKPILYIFSKYKKY 343
           T++K KP +Y +   +KY
Sbjct: 150 TVDKSKPKVYQWFDLRKY 167


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 334 QEISFGVVQDIF 369
           +EISF VV DI+
Sbjct: 437 EEISFEVVMDIY 448


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 290 TIEKKKPILYIFSKYKKY 343
           T++K KP +Y +   +KY
Sbjct: 150 TVDKSKPKVYQWFDLRKY 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,525
Number of Sequences: 438
Number of extensions: 1468
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)