Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m10
(370 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical ... 50 7e-07
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 1.4
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 1.4
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 29 1.4
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 29 1.4
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 1.4
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 1.4
Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical pr... 26 7.3
AF000262-10|AAN60530.1| 350|Caenorhabditis elegans Twik family ... 26 7.3
Z70753-3|CAA94768.1| 343|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 26 9.7
>AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical
protein Y57E12AM.1 protein.
Length = 79
Score = 49.6 bits (113), Expect = 7e-07
Identities = 27/79 (34%), Positives = 40/79 (50%)
Frame = -1
Query: 310 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 131
++I M RYT+P+N A P A F + +VTSTK +R++ KEL ++ +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 130 AXXXXXXXXXXXLWVGIYV 74
+ LWVGIYV
Sbjct: 61 SVFLGFGSVFLLLWVGIYV 79
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 150 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 13
+F W PY++++ Y C G C + Y LSY C + PF Y
Sbjct: 644 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 690
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 150 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 13
+F W PY++++ Y C G C + Y LSY C + PF Y
Sbjct: 613 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 659
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 150 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 13
+F W PY++++ Y C G C + Y LSY C + PF Y
Sbjct: 553 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 599
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 150 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 13
+F W PY++++ Y C G C + Y LSY C + PF Y
Sbjct: 553 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 599
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 150 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 13
+F W PY++++ Y C G C + Y LSY C + PF Y
Sbjct: 644 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 690
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 150 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 13
+F W PY++++ Y C G C + Y LSY C + PF Y
Sbjct: 613 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 659
>Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical
protein F11D11.5 protein.
Length = 254
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 215 EEYSYSEQQKG*MWKNCRVYWRRVP 289
E YS+ + G ++KNC W R P
Sbjct: 94 EIYSWKKTDNGWIYKNCNDGWTRYP 118
>Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical
protein C04G2.9 protein.
Length = 371
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 290 PVHVANKPGSFSTSNLFVARNRNILHGLVLRLRSYKY 180
PVHV N G S + VA + IL + +R Y Y
Sbjct: 302 PVHVNNHKGDISVGVVNVAGGKQILAKVDVRNEKYGY 338
>AF000262-10|AAN60530.1| 350|Caenorhabditis elegans Twik family of
potassium channelsprotein 37 protein.
Length = 350
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 185 KY*SLKRYVQRVTFIIGGRLIFW 117
K+ ++ +V V +IIGG L+FW
Sbjct: 60 KFNTIIAFVVLVAYIIGGALLFW 82
>Z70753-3|CAA94768.1| 343|Caenorhabditis elegans Hypothetical
protein F40F9.4 protein.
Length = 343
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 126 YFLVSEFYSCCYG*GFMCDINVRYNLS 46
+F+V C +G GFMC + + +S
Sbjct: 202 FFMVGSSMGCVFGFGFMCYLRLSNQIS 228
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 123 FLVSEFYSCCYG*GFMCDINVRYNLSYE*C-NNTPFL 16
F SEF+ CC D RY +E C N P +
Sbjct: 602 FEASEFFECCIRCCLRLDNRNRYTFQFEMCFENIPLV 638
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 123 FLVSEFYSCCYG*GFMCDINVRYNLSYE*C-NNTPFL 16
F SEF+ CC D RY +E C N P +
Sbjct: 602 FEASEFFECCIRCCLRLDNRNRYTFQFEMCFENIPLV 638
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 123 FLVSEFYSCCYG*GFMCDINVRYNLSYE*C-NNTPFL 16
F SEF+ CC D RY +E C N P +
Sbjct: 602 FEASEFFECCIRCCLRLDNRNRYTFQFEMCFENIPLV 638
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 123 FLVSEFYSCCYG*GFMCDINVRYNLSYE*C-NNTPFL 16
F SEF+ CC D RY +E C N P +
Sbjct: 602 FEASEFFECCIRCCLRLDNRNRYTFQFEMCFENIPLV 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,135,311
Number of Sequences: 27780
Number of extensions: 156457
Number of successful extensions: 381
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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