Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m09
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...   139   2e-33
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine re...    30   1.6  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81571-3|CAB04613.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z54327-9|CAA91122.2|  839|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical...    28   6.6  
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    28   6.6  
Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical ...    28   8.7  
AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine re...    28   8.7  

>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score =  139 bits (336), Expect = 2e-33
 Identities = 69/157 (43%), Positives = 102/157 (64%)
 Frame = -2

Query: 699 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAAS 520
           TKEEELLL  +S   STK +  FY NA I+S  P++LF+ VH +EI  +++ + L    +
Sbjct: 5   TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYGVHQMEIQDSLVVWGLSAVGT 64

Query: 519 TWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKLADDKKMSRKEKDERILWKKNEVADY 340
            +LL+LA +N K  LKH            E+S + A DKKM+ KEK+ER L++KNEVAD 
Sbjct: 65  AYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKKMTVKEKEERALFRKNEVADT 124

Query: 339 EATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 229
           E+T  S+FY N+L+LTI+++S+F++L    P  N ++
Sbjct: 125 ESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLI 161


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 77  YTHNSFIFLIATVCLKCLILKLFVSRGALNFHLHLV 184
           Y H++ +FL+A     CLIL    +  A NF + L+
Sbjct: 46  YYHSNLLFLVALNAASCLILAGLTAWSATNFFVQLI 81


>AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein132 protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 405 KKMSRKEKDERILWKKNEVADYEATTYSIFYNNALF 298
           K++ + EK  ++    N+  DY  TT  +FYN   F
Sbjct: 246 KEIRKAEKRRKVSTSFNKTKDYRRTTQLVFYNTIFF 281


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
 Frame = -2

Query: 657 VSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQ 478
           VS     LF   +FI++ I          L +  +I+    +    TW + ++Y N   +
Sbjct: 220 VSIAFYGLFQLLSFILALITYHPNLETSPLNLYRSILNLYYMPFIWTWAVTISYSNRVQK 279

Query: 477 LKHXXXXXXXXXXXXEMSRKLAD--DKKMSRKEKDERILWKKNEVADYEATTYSIFYNNA 304
           L               +    A    K+M +  +++R L    +  DY  TT  +FYN  
Sbjct: 280 LLEEYKNGLEIIIPCLLFPIFAGLLVKEMHKATENQRRLTSSKKTIDYNKTTRLVFYNTL 339

Query: 303 LF 298
            F
Sbjct: 340 FF 341


>Z81571-3|CAB04613.1|  352|Caenorhabditis elegans Hypothetical
           protein M01G12.4 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 405 KKMSRKEKDERILWKKNEVADYEATTYSIFYNNALF 298
           K+M +  +++R L    +  DY  TT  +FYN   F
Sbjct: 239 KEMHKATENQRRLTSSKKTIDYNKTTRLVFYNTLFF 274


>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -2

Query: 741 TYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFW 583
           T  +K      K F K  +++L D+    + K   +   N      +P W FW
Sbjct: 178 TLPMKKHESQKKHFEKHGKVMLMDYLEQETLKKERIIMRNEHWTWLVPYWAFW 230


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 604 NSNLVVLEGTFIGNKHRNYLVYPSN 530
           ++NL++ +  FIGN   N LVYPS+
Sbjct: 581 SANLIIDDPIFIGNVPNNSLVYPSS 605


>Z54327-9|CAA91122.2|  839|Caenorhabditis elegans Hypothetical
           protein C26D10.4 protein.
          Length = 839

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 203 LLYSPQEPSEDGSLMRHVIQTVLILNILDILWQLK 99
           L+Y   +PSE GSL+   I ++   NILDI  +L+
Sbjct: 552 LIYRHDKPSEAGSLVCACIVSLGFTNILDIFEKLQ 586


>AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical
           protein Y57A10A.27 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 759 FVKVKVTYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSAL 634
           F+KV +T L +    + K+  K  ELL++   R  STK+SAL
Sbjct: 10  FLKVDLTRLAEDDETHQKSTKKHTELLIELIDRK-STKASAL 50


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 319 FLQ*RTFPDYCHLEQFLH---SAYIHTYS*LHCVSHGCIWTSCSTLHRNQ 179
           +LQ    P  C L   +H   S+YI+ YS LH +SH    T+ +T   N+
Sbjct: 63  YLQMLFRPSVCPLHPSIHLSSSSYIYIYSQLHMLSHNGGPTTTTTTTPNR 112


>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +2

Query: 14  LTYFLCKVKTF*LTNIIYCNTYTHNSFIFLI------ATVCLKCLILKLFVSRGALNFHL 175
           + Y LC + T+ + ++IY  T  +  F +++      A+ C+ C I ++F     L  +L
Sbjct: 91  IIYLLCCLSTYCIPSLIYSVTPIYGPFSYILFFLQPFASFCVSCTIWQVFAI--TLERYL 148

Query: 176 HL-VPVESRAR 205
            +  P+E R R
Sbjct: 149 AVSSPLEQRTR 159


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -2

Query: 402 KMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 289
           ++ +  +++++ W     A+YEA  +  ++N +LFLT+
Sbjct: 15  RVGKLMRNDKLAWS----AEYEAKKFKFYHNTSLFLTL 48


>AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical
           protein W06D4.4 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 687 ELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 547
           E+L       VS++   +   N    +AIP+W+ W    + +ST ++
Sbjct: 530 EILRFPIDGRVSSQKCVVNIDNMSSSNAIPMWMEWEFGGINLSTGLL 576


>AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein63 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = +1

Query: 292 SQEKCVIVEN*V-----CGSFI--ICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSIL 450
           SQ KC+I+ + +      G F   ICH     Q  F+ F ++   +I    G F  NS++
Sbjct: 118 SQTKCLILVSWMYSLTYAGLFYLRICHFRFDEQVQFLTFSNSRICMIVGWNGDFIKNSVI 177

Query: 451 PAHSNTVLQLELSVTVGKSQQ 513
            A    ++ L  +VT+ KS+Q
Sbjct: 178 VA----IIMLLDTVTIMKSRQ 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,526
Number of Sequences: 27780
Number of extensions: 375443
Number of successful extensions: 999
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)