Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m08
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    26   5.1  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 411 HYIKYKFYTKILRNNFIHYFYHKC 340
           HY  ++  TK++ +N +H+ +  C
Sbjct: 608 HYSMFQVMTKLIADNLVHFSFQSC 631


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 313  VLDLIYIDFIVFGAINFVFPEIIFMYFVGRSYQC 212
            +LD IY   + FG   FVF    F+ + GR+ +C
Sbjct: 1179 MLDGIYQSLVCFGVALFVFKFGDFVSWTGRNIEC 1212


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 685 IYKKKNIAFVGRLPYG 638
           + KKK + +VGRLP+G
Sbjct: 100 LQKKKGVLYVGRLPHG 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,406
Number of Sequences: 5004
Number of extensions: 54164
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)