Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m06
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.44
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 29 0.77
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.8
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 4.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 7.2
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 7.2
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 7.2
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 26 7.2
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.44
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -2
Query: 463 LPSIPDIAQRA-GSFEDSYELCDFRVQIMTPLAAQSDDLKWYHVLNFNENPLQGFRVEIC 287
+P++ D + R+ GS DS+ D QI AA S++ + N V I
Sbjct: 10 MPTVKDDSTRSRGSDVDSFTSTDNVTQINVE-AAISENKNEEKPIQDNSEQEFNPHVSII 68
Query: 286 NTTSTGCAKFVTMENNYNPKCVQKFIFRKMKILSESG 176
G F ++ N ++ +CV++ + +L ESG
Sbjct: 69 QRQLNGYVGFASLPNQWHRRCVRQGFNFNVLVLGESG 105
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = -2
Query: 601 PYVPEIPESCKKIGICDKIPN-------YPREQVEKIVAKLGEKTEFQFDKLDLPSIPDI 443
PY P + S + + IPN YP E + +KLG++ + L P D
Sbjct: 156 PYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDT 215
Query: 442 AQRAGSFEDSYELCDFRVQI 383
R +F ++ + FR I
Sbjct: 216 TPRVVTFANTDDYISFRHHI 235
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 613 TLRSAPGTPPCLPESRPFEQIVCVS 687
T SAP PP +P SRP E++ +S
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLS 249
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 595 VPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLPSIPDIA 440
VPE K+I CDK P P + + G++ F+ K PSI IA
Sbjct: 514 VPEYMRLAKRIATCDK-PEDPHQ----FKLQSGDQNTFRISKKKKPSICPIA 560
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 16 KFLSNKFS*SHFMILTRTHTHTQAQALAHVQFNRVAWQHTNN 141
KFL NK S+F + R Q L+ +F+ AW H+ N
Sbjct: 274 KFLCNKKGLSYFKAVIRAFEWLVEQKLSKTRFS--AWMHSFN 313
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 138 QQLGTFMDLSIISPLSLRIFIFLNINF*THFGL*LFSIVTNFAQPVLVVLHISTLK 305
Q+ G MDL SP++ +I+ + +F T++G + IV + P + +H K
Sbjct: 1691 QEQGMGMDLYASSPVARKIWDSADKHFLTNYGFSIIDIVKH--NPHSITIHFGGSK 1744
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 254 DDGK*LQSEMRSEVYIQKNEDPKRKRRNDREVHESSE 144
+DGK L + ++ ++ ++ KRK R RE E +
Sbjct: 27 EDGKPLSKKALKKLEKEREKEQKRKEREAREAEEKKK 63
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 507 LSWARKQSFNSTNWTYLRYRISPSG 433
+S A ++ NSTNW +R++ P G
Sbjct: 450 VSNAHFENLNSTNWQSMRFKPPPPG 474
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 529 EQVEKIVAKLGEKTEFQFDK 470
E++EK+ + EKTE FDK
Sbjct: 483 EEIEKLALLIKEKTEIVFDK 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,484
Number of Sequences: 5004
Number of extensions: 68657
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -