Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m06
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316... 33 0.20
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 31 1.4
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 29 4.3
02_01_0745 - 5550472-5551053 28 7.5
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 28 9.9
07_01_0236 - 1725061-1727070 28 9.9
05_01_0593 - 5335134-5335808 28 9.9
03_02_0220 - 6531255-6532667 28 9.9
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 28 9.9
>08_01_0360 -
3160723-3160821,3160911-3160995,3161099-3161205,
3163066-3163155,3163265-3163408,3163572-3163622,
3163735-3163844,3163928-3164123
Length = 293
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = -1
Query: 302 QGRDMQHYEY--RLREIRDDGK*LQSEMRSEVYIQKNE 195
+G++ QHYE RLRE D+GK + +E+R+E + E
Sbjct: 19 EGKERQHYEKKRRLREALDEGKPIPTELRNEELALRRE 56
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 601 PYVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLP 458
P +P + E C + G+ +P YP ++ K + K+G+ ++ DLP
Sbjct: 239 PRIPALVELCIQAGV--NLPEYPTKRRRKPIIKIGKNEFVDANEDDLP 284
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 529 LLGNSVSCHRCQFSCTTPGFLGRMGLRLTLRSAPGT-----PPCLPESRPFEQIVCVSRM 693
L N V+ RC++SC G + ++ + SA GT PP P PF + C +R+
Sbjct: 477 LHANEVT-ERCKWSC----MFGEVEIQAEI-SADGTLRCYSPPHKPGRVPF-YVTCSNRL 529
Query: 694 VCSRS*KFHFQFGDA 738
CS +F F+ D+
Sbjct: 530 ACSEVREFEFRPSDS 544
>02_01_0745 - 5550472-5551053
Length = 193
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 604 NPYVPEIPESCKKIGICDKIPNYPREQVEKIVAKL 500
+PY P P S K + + D+I P E++++I L
Sbjct: 49 DPYGPMSPPSQKVVDLADRIAALPPEEIKQIAPAL 83
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 589 EIPESCKKIGICDKIPNYPREQV 521
E+ ++C +I ICD +PN+ E +
Sbjct: 434 EVEDACAEICICDWLPNWRNENI 456
>07_01_0236 - 1725061-1727070
Length = 669
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 399 SHSSYESSNEPARWAISGIEGKSSLSN*NSVFSPN-LATIFSTCSLG*FGILSQMPIFLH 575
SH + ++ E R+ SG G L N ++ +PN L + + + + P+ H
Sbjct: 18 SHKFFAAAGEEERFLYSGFSGTDILVNGMAMVTPNGLLQLTNGMAQSKGHAIHPTPLRFH 77
Query: 576 DSGISGT 596
+ G +GT
Sbjct: 78 EHGSNGT 84
>05_01_0593 - 5335134-5335808
Length = 224
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 433 AGSFEDSYELCDFRVQIMTPLAAQSDDLKW--YHVLNFNENPLQGFRVE 293
AGS D++ + D R + P A S +W + + F + P G R+E
Sbjct: 53 AGSGADAHAVVDLRFALQEPTPAASVPWRWLAFSLCRFLDLPADGSRLE 101
>03_02_0220 - 6531255-6532667
Length = 470
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 655 SPGDRVVFPGLTSRSGVNPYVPEIPESCKKIGICDKIPNYPREQVEKI 512
SPGD G+ S GV+P VP + S K+ R+ +EK+
Sbjct: 167 SPGDVCAVLGIMSACGVSPSVPLVVTSVHKLATAGDFVG-ARQLIEKM 213
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 579 SGISGTYGFTPDLEVSPGNTTLSPGESSV*ANRLCIENGLFKILKVPFS 725
SG SG YG P ++ P ++ S NR+ +++ + K+ + FS
Sbjct: 489 SGGSGNYGRLPTAQILPQAVPINSSPSGSSGNRVPVDDVVEKVATMGFS 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,093,371
Number of Sequences: 37544
Number of extensions: 422803
Number of successful extensions: 1175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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