Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m06
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical p...    32   0.55 
AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    28   6.7  
Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical
           protein C37C3.10 protein.
          Length = 123

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 324 TKIHYKVSGSRYATLRVPVARNS*RWKITTIR 229
           T I +++  S Y+++RVPVARN    K TT++
Sbjct: 71  TNIFFQLESSSYSSMRVPVARNVAIGKTTTLK 102


>AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical
           protein R02D3.2 protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 520 EKIVAKLGEKTEFQFDKLDLPSIPDIAQRAGSFEDSYELCDFRVQI 383
           + +V K  +K+   ++ L LPS  DI  RAG ++ +Y L ++ +Q+
Sbjct: 99  QDLVRKALDKSNPIWELLTLPSRMDICIRAGYYDLAYTLTNYGLQL 144


>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical protein
            R134.1 protein.
          Length = 1140

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 628  GLTSRSGVNPYVPEIPESCKKIGICD--KIPNYPREQVE 518
            GL +R+G N     +  S K +  C   KIP+ PRE+VE
Sbjct: 953  GLPTRNGFNHIKQIVDMSLKFMDYCKNFKIPHLPRERVE 991


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 448 DIAQRAGSFEDSYELCDFRVQIMTPLAAQSDDLKWY 341
           DI  R  SF DS +L    V I  P + +++DL  Y
Sbjct: 162 DIKMRPNSFNDSCQLPQIGVDICLPWSCRNEDLTDY 197


>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 713 SSIFSSGMLPRFSLNSSXVVFGCGLGC 793
           S  FS  M P F +  S  +FGCG+GC
Sbjct: 346 SLFFSDYMAPYFLVGVS--IFGCGIGC 370


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 713 SSIFSSGMLPRFSLNSSXVVFGCGLGC 793
           S  FS  M P F +  S  +FGCG+GC
Sbjct: 349 SLFFSDYMAPYFLVGVS--IFGCGIGC 373


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +3

Query: 459 GKSSLSN*NSVFSPNLATIFSTCSLG*FGILSQMPIFLHDSGISGTYGFTPDLEVSPGNT 638
           GKS + +  + FS  LAT F   +L     L QMP  +  S I   Y   PD     G+ 
Sbjct: 715 GKSPMESVEAQFSDGLATTFVNNALLAAQNLLQMPETVSHSNIQ--YTSLPDEPEDEGSD 772

Query: 639 TLSPGES 659
              PG++
Sbjct: 773 AYVPGQT 779


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,823,980
Number of Sequences: 27780
Number of extensions: 385391
Number of successful extensions: 1158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)