Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m06
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   7.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 538  NSVSCHRCQFSCTTPGFL 591
            NSV+  R Q S T+ GFL
Sbjct: 978  NSVTALRAQMSATSQGFL 995


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 288 HISTLKPCSGFSLKFNTWYHLRSSD 362
           H + ++ C    +KF T + + SSD
Sbjct: 319 HSTDIQNCDSVKIKFETLHTMDSSD 343


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 176 RNDREVHESSEL 141
           RND +VH SS+L
Sbjct: 532 RNDNQVHHSSKL 543


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 336 Y*ILTKIHYKVSGSRYATLRV 274
           Y IL + HY ++ + Y TL +
Sbjct: 235 YNILLRRHYSMNSTTYVTLTI 255


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 179 RRNDREVHESSELLFVC 129
           +R+ ++ HE S+ L+VC
Sbjct: 22  KRHFQDKHEQSDTLYVC 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,863
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)