Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m05
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 30 0.44
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 2.4
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 2.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.1
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 4.1
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 4.1
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 5.4
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 26 7.2
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.5
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 9.5
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.9 bits (64), Expect = 0.44
Identities = 21/97 (21%), Positives = 38/97 (39%)
Frame = -2
Query: 564 DVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAE 385
+ F V L D+ EI + Y+ P K+ E + ++ K+ K +
Sbjct: 598 EFFRFSVGGLTDVAEIKGHRRTYIGAMPGKIVQALKKVQTENPLILIDEIDKVGKSHQGD 657
Query: 384 IRKALAEAVEDICKCAYMDVYCNDLTAIDKVIDSCPA 274
AL E ++ A++D Y + + V+ C A
Sbjct: 658 PASALLELLDSEQNSAFLDYYMDIPLDVSSVLFVCTA 694
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 540 PLKDLTEIAPNEDPYVDCDPLVF 472
PLK++T + P +DP + + LV+
Sbjct: 314 PLKNITSLLPKQDPLISTEILVY 336
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 498 YVDCDPLVFKII---KKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVEDICKCAYMD 328
Y D ++K I K R P VEAR ++KL R+ + R VE++ K + D
Sbjct: 469 YADNTQQLYKNIVFGKVRFPRGLLSVEARDLIKLLLNRNPKHRLGAHGDVEEVMKHPFFD 528
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -2
Query: 621 SEPD-EPLEPK--PALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRS 451
SE D E LE + A +++ + + + I + + ++ E + DP+V ++ ++ +
Sbjct: 651 SETDIEALERRLSKAYRMEAQEEAYAINIGGGRVISPEELEEIARRNVDPMVSELSERAA 710
Query: 450 PEEQAKVEARKMVKLKKQRDAEIR 379
E + K +A++ +LKK E R
Sbjct: 711 QERERKEQAKEAKRLKKLAKEEKR 734
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 534 KDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKV 430
K LT I + P +CDP V+KI++ ++ +
Sbjct: 6 KVLTIIKLLKAPLAECDPTVYKILESEKSRQKESI 40
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 241 FLVAYTLWFFKGWTTVYNLIDGS*IITIDIHIGTFANVF 357
FLV L G+ V+ + D + +I + H G FA+ +
Sbjct: 58 FLVPLLLTVIAGFVRVWKIADSNVVIWDEAHFGKFASYY 96
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 624 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNED 502
D E D +E + AL++QRK + + + D+++ A N D
Sbjct: 136 DDEFDARMEEQEALRLQRKRLEKVSETDAIDDISQWADNSD 176
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 255 ICHEESLSSLSSNATWDIEYTPP 187
+C+EES L + WDI P
Sbjct: 155 VCYEESKKYLQKQSNWDISVIAP 177
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 318 YNRHPYRHICKCLRRLRPGPFGF 386
+NRHP+ + C P F F
Sbjct: 85 FNRHPFTRVKSCFSSSSPSKFSF 107
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 86 NFGASTIPASAGIYCVSTCIHILLFLGAKSKQP 184
++G +P SA I +ST + I +GA ++ P
Sbjct: 85 SYGLVIVPVSACICLISTIMTIFAHIGAIARSP 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,141
Number of Sequences: 5004
Number of extensions: 58853
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -