Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m03
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.7  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  ITSDINNIQEIIKCTNISLYVYII 100
           + + I NI +IIK TN  +  YII
Sbjct: 55  VHNHIQNIFKIIKSTNEKITRYII 78


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  ITSDINNIQEIIKCTNISLYVYII 100
           + + I NI +IIK TN  +  YII
Sbjct: 38  VHNHIQNIFKIIKSTNEKITRYII 61


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 343 VQSQVRTFFYKLSFNSSHFRVKSK*YDDT*QNISC 447
           V ++++   Y   FN  +FR+     +D  +N  C
Sbjct: 379 VSNRIQKVIYGFDFNDVNFRILIANVNDLIKNTRC 413


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 379 SFNSSHFRVKSK*YDDT*QNISCSIY 456
           +FN  +FR+     DD  +N  C  Y
Sbjct: 397 NFNDVNFRILGANVDDLMRNTRCGRY 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,628
Number of Sequences: 438
Number of extensions: 3730
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)