Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12m01
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 0.51
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 0.68
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 2.7
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 2.7
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 24 6.3
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 24 6.3
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 24 6.3
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 24 6.3
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 24 6.3
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 8.3
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 8.3
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 24 8.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 8.3
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 27.9 bits (59), Expect = 0.51
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 46 ILYSLEVSWIDDRYMGWNEI 105
+LY++E SWI +Y+G N I
Sbjct: 105 VLYNVEQSWIGYKYLGGNRI 124
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 27.5 bits (58), Expect = 0.68
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 333 LLFTILGISNVEASTGY--DFGDFLATVLGIGIAVVGILACLGNY 205
L F ++ S TG+ +FG LA L +G G+ CL Y
Sbjct: 127 LAFIVISYSLTTIFTGFCHNFGGLLAARLVLGFCEAGLFPCLALY 171
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 357 KMYFQLCFLLFTILGISNVEASTGYDFGDFL 265
++ +L FL FT+ SN E D+ DF+
Sbjct: 6 QILLRLLFLAFTLKSTSNAEKHDKVDYKDFV 36
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 52 YSLEVSWIDDRYMGWNEIFFSIFIYSRLAC--AETRWQVLMNLYKLVSRP 195
Y ++ W+D G F++ I+ RLA ++ R++ ++ +Y ++ P
Sbjct: 290 YLNQMEWLDGTVKGEENSQFTLKIHERLASFFSQKRYRNVVTIYGALNEP 339
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 294 STGYDFGDFLATVLGIGIAVVGIL 223
S GY G FL+ +L + IAV ++
Sbjct: 260 SLGYQVGSFLSHLLSLTIAVTALV 283
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 138 RKSRINEYGKKYLIPSHIPVIYPRNFQAI 52
R ++ E GKK + +P + P N Q I
Sbjct: 602 RVQKVIESGKKIALKKDVPRLIPSNIQPI 630
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 108 KYLIPSHIPVIYPRNFQAI*NKLKVPNLLFRYYINV 1
K L P+ I V +P+NF+ + ++ LFR Y ++
Sbjct: 127 KKLFPTEIGVEFPKNFRKVIQ--QIFRRLFRIYAHI 160
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 55 SLEVSWIDDRYMGWNEIFFSIFIYSRLACAETRWQVLMNLYKLVS 189
++E+S ++Y+ N I ++Y R CA+ L +Y L +
Sbjct: 672 AMEISARGNQYLQDNRIDNKCYLYERQKCADAIGYALNLIYLLAA 716
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 6.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 91 PYTCHLSKKL-PSYIE*VKST*FTVSLLYKC 2
PY L KKL PS + +++T +SLLY+C
Sbjct: 239 PYEPRLVKKLIPSLTDIIENT-HAMSLLYEC 268
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 23.8 bits (49), Expect = 8.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 360 FKMYFQLCFLLFTI--LGISNVEASTGYDFGDFLATVLGIGIAVVGILAC 217
F +Y + +++ I G V A +D G+ + +GIGI +V AC
Sbjct: 335 FTLYLTVVYIIGYIDFEGYPIVFAKYSFDQGEIGLSFIGIGIGIVLAGAC 384
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 299 STLLIPRIVNNRKHNWKYIL 358
+T+L+ RI+ NR H W ++
Sbjct: 2024 TTVLLERIICNRPHPWGLLI 2043
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 316 WYKQCGSIYRLRLW*LFGYCF 254
+Y +C Y ++LW F CF
Sbjct: 135 FYDECKRRYNIKLWKTFTDCF 155
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 220 LFG*LRTAKGEKRVYIGSSKLAILFQHTQ 134
L G + G K VY+GS L I+FQ Q
Sbjct: 144 LLGPMSDIFGRKWVYVGSLILYIIFQIPQ 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,369
Number of Sequences: 5004
Number of extensions: 35008
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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