Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12m01
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.36 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   1.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   7.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 321 ILGISNVEASTGYDFGDFLATVLGIGIAVVGILACLG 211
           ILG+S  +  TG  F      VLG  I V+    C G
Sbjct: 37  ILGVSK-QIETGLAFPSITLIVLGSIIFVISFFGCCG 72



 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 273 DFLATVLGIGIAVVGIL 223
           +F+  V G+GI  +G+L
Sbjct: 16  NFVFAVCGLGILTLGVL 32


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 192 PFAVRNYPNRLKFLQRLYRYLK 257
           PF  +NYP   + + R Y+ +K
Sbjct: 81  PFMQQNYPYEWQLILRRYKIMK 102


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 209 LPK-QAKIPTTAIPIPKTVAKKSPKS*P 289
           LPK +  IP T   +PK    KSPK  P
Sbjct: 203 LPKWKDGIPVTLTTVPKHSKTKSPKLRP 230


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 101 RYFFPYSFIL 130
           R+FFP+SF++
Sbjct: 364 RFFFPFSFLI 373


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 215  WVITHGKGRETSLYRFIKTCHLVSAHASLE*MNMEKNISFHPIYLSSIQETSKLYRIS 42
            W   H  G   + Y    T H  +AH +L+ + + ++ + H +       T +LY  S
Sbjct: 1424 WKSGHNGGASLTGY----TLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTS 1477


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 215  WVITHGKGRETSLYRFIKTCHLVSAHASLE*MNMEKNISFHPIYLSSIQETSKLYRIS 42
            W   H  G   + Y    T H  +AH +L+ + + ++ + H +       T +LY  S
Sbjct: 1420 WKSGHNGGASLTGY----TLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTS 1473


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 104 ISFHPIYLSSIQETSKLYR 48
           I FH I L S+   S +YR
Sbjct: 459 IYFHSIVLGSLLNPSHMYR 477


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 226 FSLFG*LRTAKGEKRVYIGSSKLAI 152
           FSL     T+KGE R+  G  K AI
Sbjct: 395 FSLLRDAFTSKGEYRMSTGEMKEAI 419



 Score = 21.0 bits (42), Expect = 4.5
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 201 RQRARNEFI*VHQNLPSCFSTRKSRINEYGKKYLIPSHIPVIYPRNFQAI*NKLKVPN 28
           R R+ +EF   HQ L      +K+  +    K L    +PVI P N     NK + PN
Sbjct: 735 RARSESEFEMYHQQLQGVAKNKKNVGSMSRNKAL----LPVIKPANV----NKEQSPN 784


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 212 PKQAKIPTTAIPIPKTV 262
           P+   +PT   P P TV
Sbjct: 151 PRGGSLPTPVTPTPTTV 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,118
Number of Sequences: 438
Number of extensions: 2662
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)