Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l24
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 208 7e-55
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 27 2.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 2.9
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 3.8
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.7
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 25 8.8
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 8.8
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 25 8.8
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 208 bits (508), Expect = 7e-55
Identities = 106/179 (59%), Positives = 135/179 (75%), Gaps = 2/179 (1%)
Frame = -2
Query: 676 LRNYSESRH-PFVYSKEVSRAKSENMPIVALESTIITHGMPYPQNLETALEVENIIRQRG 500
LRN R+ P SKEV+ A N+P+VALESTIITHGMPYPQN E A++VE+ +R G
Sbjct: 30 LRNILCRRYSPLALSKEVTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMG 89
Query: 499 AVPATVAILKGQLTVGLTEDQLRYLAQA-KGVIKASRRDLAYIAAAKLDGATTVAGTIIA 323
AVPAT+A+L GQ T+GL + QL LA++ + K SRRDL+Y+A+ +L+G TTVA T+I
Sbjct: 90 AVPATIALLNGQCTIGLEQFQLSELAKSGETAYKVSRRDLSYVASQRLNGGTTVAATMIL 149
Query: 322 SELADIPVFVTGGIGGVHREGESTLDISADLNELGRSKTLVVCSGIKSILDIGRTLEYL 146
+ A I VF TGGIGGVHR E+++DISADL ELGR++ VV +G+KSILDIGRTLE L
Sbjct: 150 ARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSAGVKSILDIGRTLEVL 208
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -2
Query: 436 LRYLAQAKGVIKASRRDLAYIAAAKLDGATTV-AGTIIASELADIPV--FVTGGIGGVHR 266
LR ++ + A+ +L++I + +D + A + +E+ I + G GVH
Sbjct: 130 LRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHP 189
Query: 265 EGESTLDISADLNELGRSKTLVVC 194
TL+I+ +N+L + K+ C
Sbjct: 190 TAGQTLNIAPTMNDLNKKKSSSQC 213
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 266 TMDAPNSTGHEDWYVS*F*SNNCPSDGCGTVKLSRSYISKITSR 397
++ P+S H D V + SDG G +K S+ Y S+IT+R
Sbjct: 429 SLQVPSS--HRDTDVVLLSGRHSDSDGNGALKRSKIYASEITAR 470
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 397 SRRDLAYIAAAKLDGATTVAGTIIASE 317
SR LAY+A+ + A+ +AG I+A E
Sbjct: 468 SREALAYLASPAVVAASAIAGKIVAPE 494
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 670 NYSESRHPFVYSKEVSRAKSENMPIVALESTIITHGMPY 554
N++E F Y+K+V+ EN PI A T IT G PY
Sbjct: 429 NFNEKNLKF-YAKKVANVSDENFPIFA---TAIT-GRPY 462
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = -1
Query: 629 SFSGEVRKYANSSPRINYYYTRNALPTELGNGSGSGEYN*ATGCRSSDCGNS 474
+FSG K S YYY A E N S YN T +S C S
Sbjct: 16 AFSGV--KADGCSEENGYYYCNQASEVEFTNVGYSSTYNEITNMDTSSCSCS 65
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 95 SYFKSKKNSLASMNSFYQIFESSSNVEY*FDSAANNE-CFASPEFI 229
+YF K++S + F +F S ++ D AN+E P+F+
Sbjct: 32 TYFTGKRSSKVVLIGFMDVFGLSKQIKEGADQLANHELAIYLPDFL 77
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 658 SRHPFVYSKEVSRAKSENMPIVALESTIITHGMPYPQNLETA-LEVE 521
SRHP Y S +++E+ P V + T + P+N T+ L++E
Sbjct: 114 SRHPISYILANSSSRTESEPNVQISDTDFDNISTEPRNQTTSPLDLE 160
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 685 NYAEQVSVCHLVGTPS 732
+YAE V V H+VG PS
Sbjct: 91 SYAEHVPVVHIVGMPS 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,877
Number of Sequences: 5004
Number of extensions: 71226
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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